SCN Proteipedia

Hg_chrom3_TN10mRNA_7071

Organism: Heterodera glycines Gene Locus: chr3:15497278-15507950 Feature type: polypeptide

Protein Sequence

Length: 928

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.128	0.827	1.195	0.929	1.509	1.05	0.603	0.916	0.862	0.947	1.274	0.824	0.688	1.078	1.627	0.77	0.936	0.931	0.912	0.666	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_6701	—	—	1.222	1.000	1.000	1.000	1.000	2.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRRR,RRPKS,KRGTSDSTAQRYLRR,KKRGTGISNLEQEKQRQR	35-84	0.760	—	—	—	—	0.000	—	—	0.408	0.076	0.033	0.683	0.036	0.022	0.041	0.004	0.305	0.102

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000187	10.000	1.000	Hsc_gene_4693.t1	Hsc_gene_1705.t1;Hsc_gene_1705.t2	—	Q23551.3 Twitchin [Caenorhabditis elegans]	KAI3421283.1 IG-like protein [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.869\|GO:0110165_0.867\|GO:0005622_0.802\|GO:0008150_0.788\|GO:0003674_0.734\|GO:0009987_0.720\|GO:0043226_0.679\|GO:0043229_0.672\|GO:0005488_0.632\|GO:0005737_0.619\|GO:0043228_0.549\|GO:0043232_0.549\|GO:0005515_0.544\|GO:0065007_0.537\|GO:0050789_0.525	IPR003598+200-267_693-763_841-907+\|IPR003599+192-276_517-603_687-774_835-914+\|IPR003961+398-491_400-506_401-494_410-497+\|IPR007110+192-272_680-774_827-912+\|IPR013087+99-121_101-121_127-149_129-149+\|IPR013098+198-263_519-602_682-773_831-905+\|IPR013783+193-292_393-503_504-618_672-778_824-918+\|IPR036116+390-499+\|IPR036179+200-266_518-611_680-775_830-915+\|IPR036236+96-145+	SM00060+398-491+\|SM00355+99-121_127-149+\|SM00408+200-267_693-763_841-907+\|SM00409+192-276_517-603_687-774_835-914+	PF00041+410-497+Fibronectin_type_III_domain\|PF07679+198-263_519-602_682-773_831-905+Immunoglobulin_I-set_domain	G3DSA:2.60.40.10:FF:000031+510-604+Myosin-binding_protein_C,_slow_type\|G3DSA:2.60.40.10:FF:000032+677-777+palladin_isoform_X1\|G3DSA:2.60.40.10:FF:000050+829-916+Titin_isoform_B	PTHR14340+444-619+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	249-420;601-676;783-832	4.000	1-248;421-600;677-782;833-928	8omw_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.657	104470.180	8.037	15.500	33.836	7.759	52.586	47.414	18.211	15.625	50.431

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	violet	625.005	380.963	579.578	376.893	427.154	488.705	704.963	381.483	239.550	1302.334	846.855

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.375	-0.153	-0.511	—	0.209	0.540	—	1.033	—	—	—	—	—

No JSON data available for plots.

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