Hg_chrom4_TN10mRNA_7075
Organism: Heterodera glycines Gene Locus: chr4:19417-22237 Feature type: polypeptideProtein Sequence
Length: 76
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.153 | 0.918 | 0.957 | 0.0 | 1.316 | 1.012 | 0.627 | 1.316 | 0.877 | 1.422 | 0.598 | 2.322 | 1.096 | 1.012 | 1.88 | 0.94 | 1.941 | 0.797 | 1.012 | 1.161 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6705
|
— | — |
2.778
|
3.000
|
4.000
|
1.000
|
3.000
|
4.000
|
4.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.436
|
0.141
|
0.055
|
0.521
|
0.184
|
0.212
|
0.049
|
0.076
|
0.121
|
0.330
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000402
|
5.000
|
3.000
|
Hsc_gene_24000.t1;Hsc_gene_24000.t2;Hsc_gene_24000.t3
|
— | — |
Q27504.1 Putative carbonic anhydrase 3 [Caenorhabditis elegans]
|
KAF7634180.1 Alpha-carbonic anhydrase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.765|GO:0110165_0.756|GO:0008150_0.610|GO:0005622_0.574|GO:0003674_0.573|GO:0005737_0.507
|
IPR001148+1-73_7-70+|IPR023561+6-68+|IPR036398+2-74_6-71+
|
— |
PF00194+7-70+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+6-68+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-76
|
7oa1_BBB
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
8917.110
|
7.201
|
1.000
|
28.947
|
11.842
|
55.263
|
44.737
|
15.789
|
13.158
|
44.737
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
4.118
|
1.235
|
3.255
|
4.518
|
2.649
|
2.006
|
3.639
|
3.321
|
9.995
|
2.785
|
5.875
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.