Hg_chrom4_TN10mRNA_7077
Organism: Heterodera glycines Gene Locus: chr4:30849-33100 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.73 | 0.998 | 1.487 | 0.98 | 0.704 | 0.7 | 2.745 | 1.307 | 0.848 | 0.891 | 0.923 | 2.397 | 0.98 | 1.281 | 0.728 | 0.771 | 1.367 | 1.207 | 0.346 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6706
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.762
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.190
|
0.376
|
0.038
|
0.669
|
0.104
|
0.065
|
0.212
|
0.011
|
0.140
|
0.589
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003747
|
2.000
|
1.000
|
Hsc_gene_6776.t1
|
— | — |
Q23551.3 Twitchin [Caenorhabditis elegans]
|
KAI3421283.1 IG-like protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.852|GO:0005575_0.845|GO:0110165_0.845|GO:0003674_0.766|GO:0005622_0.737|GO:0005737_0.720|GO:0009987_0.702|GO:0065007_0.665|GO:0050789_0.642|GO:0043226_0.633|GO:0043229_0.623|GO:0005488_0.600|GO:0032501_0.579|GO:0005515_0.571|GO:0032502_0.559|GO:0048856_0.559|GO:0009653_0.509
|
IPR003598+168-234+|IPR003599+162-241+|IPR007110+154-239+|IPR013098+158-232+|IPR013783+151-245+|IPR036179+157-242+|IPR052385+164-245+
|
SM00408+168-234+|SM00409+162-241+
|
PF07679+158-232+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000050+156-243+Titin_isoform_B
|
PTHR35971+164-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-255
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
29166.630
|
7.826
|
9.000
|
29.020
|
16.863
|
44.706
|
55.294
|
17.647
|
11.373
|
48.627
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
63.383
|
22.935
|
19.335
|
14.832
|
12.754
|
12.234
|
30.367
|
45.048
|
40.156
|
188.121
|
124.707
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.766
|
— | — | — |
1.317
|
1.773
|
— | — | — | — | — | — |
No JSON data available for plots.