Hg_chrom4_TN10mRNA_7078
Organism: Heterodera glycines Gene Locus: chr4:36293-37217 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 1.157 | 0.995 | 0.858 | 0.746 | 0.765 | 0.592 | 1.741 | 1.106 | 1.479 | 0.98 | 0.878 | 1.658 | 1.052 | 1.523 | 1.066 | 0.816 | 0.678 | 1.531 | 0.732 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6707
|
— | — |
3.111
|
4.000
|
2.000
|
1.000
|
3.000
|
3.000
|
4.000
|
1.000
|
3.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
FKRR
|
12-32
|
0.953
|
— | — | — | — |
0.000
|
— | — |
0.081
|
0.938
|
0.047
|
0.215
|
0.070
|
0.075
|
0.110
|
0.050
|
0.141
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001249
|
4.000
|
1.000
|
Hsc_gene_18842.t1
|
— | — |
Q99766.4 ATP synthase subunit s, mitochondrial [Homo sapiens]
|
KAH7717572.1 Protein C05C8.1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.896|GO:0110165_0.896|GO:0005622_0.850|GO:0016020_0.813|GO:0043226_0.796|GO:0043229_0.794|GO:0005737_0.775|GO:0043227_0.767|GO:0043231_0.765|GO:0031090_0.575|GO:0005739_0.569|GO:0031967_0.563|GO:0005740_0.554|GO:0031966_0.554|GO:0005743_0.550|GO:0019866_0.550
|
IPR006553+109-134_137-162+|IPR032675+24-199+
|
SM00367+109-134_137-162+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
23025.460
|
9.681
|
11.500
|
27.363
|
13.930
|
47.761
|
52.239
|
17.413
|
9.950
|
47.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
10.311
|
3.972
|
4.702
|
1.870
|
1.662
|
0.735
|
17.245
|
13.726
|
35.209
|
2.239
|
16.369
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
4.543
|
4.112
|
— | — | — | — | — | — |
No JSON data available for plots.