Hg_chrom4_TN10mRNA_7084
Organism: Heterodera glycines Gene Locus: chr4:99709-105704 Feature type: polypeptideProtein Sequence
Length: 644
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 1.228 | 0.903 | 0.589 | 0.725 | 1.035 | 0.647 | 1.398 | 1.139 | 1.427 | 0.918 | 2.466 | 1.337 | 0.956 | 1.426 | 1.065 | 0.764 | 0.682 | 0.956 | 1.37 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6713
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKGLEDNFVPEKLKKS,RRSDKYEKLAQRIRRRTS
|
54-76
|
0.997
|
40-76
|
0.920
|
— | — |
0.068
|
— | — |
0.050
|
0.103
|
0.021
|
0.137
|
0.182
|
0.148
|
0.197
|
0.017
|
0.815
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002028
|
1.000
|
3.000
|
Hsc_gene_24780.t1;Hsc_gene_24780.t2;Hsc_gene_24780.t3
|
— | — |
F1R8P4.2 Glycine receptor subunit alpha-2 [Danio rerio]
|
KAI3413310.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.951|GO:0009987_0.934|GO:0005575_0.924|GO:0110165_0.922|GO:0016020_0.916|GO:0051179_0.866|GO:0006810_0.863|GO:0051234_0.863|GO:0071944_0.852|GO:0005886_0.850|GO:0003674_0.825|GO:0055085_0.821|GO:0065007_0.812|GO:0006811_0.811|GO:0034220_0.800|GO:0050789_0.793|GO:0005215_0.776|GO:0005216_0.776|GO:0015075_0.776|GO:0015267_0.776|GO:0022803_0.776|GO:0022857_0.776|GO:0050794_0.743|GO:0022836_0.737|GO:0007154_0.731|GO:0023052_0.725|GO:0030054_0.721|GO:0050896_0.706|GO:0045202_0.700|GO:0032501_0.677|GO:0015276_0.668|GO:0022834_0.668|GO:0098660_0.654|GO:0051716_0.651|GO:0007267_0.640|GO:0098916_0.629|GO:0099536_0.629|GO:0099537_0.629|GO:0007268_0.619|GO:0015318_0.613|GO:0065008_0.608|GO:0007165_0.606|GO:0003008_0.580|GO:0005230_0.577|GO:0006820_0.572|GO:0006821_0.572|GO:0015698_0.572|GO:0098590_0.572|GO:0098656_0.560|GO:0042391_0.553|GO:0043226_0.552|GO:0008509_0.550|GO:0098661_0.534|GO:1902476_0.533|GO:0050877_0.529|GO:0005253_0.524|GO:0015103_0.517|GO:0015108_0.517
|
IPR006028+268-288_294-315_328-349_612-632+|IPR006029+273-472+|IPR006201+82-614+|IPR006202+78-133_162-264+|IPR036719+266-636+|IPR036734+62-154_79-264_158-262+|IPR038050+263-396_569-642+
|
— |
PF02931+78-133_162-264+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+273-472+Neurotransmitter-gated_ion-channel_transmembrane_region
|
— |
PTHR18945+82-614+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
393-527
|
2.000
|
1-392;528-644
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
74111.520
|
9.753
|
33.000
|
25.155
|
13.509
|
46.584
|
53.416
|
15.839
|
9.317
|
45.186
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
551.924
|
24.668
|
789.480
|
200.140
|
32.149
|
87.000
|
37.639
|
442.171
|
2113.128
|
224.852
|
1034.113
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.771
|
2.880
|
-1.873
|
-2.675
|
1.452
|
-1.196
|
2.244
|
-3.411
|
3.132
|
-3.232
|
— | — | — |
No JSON data available for plots.