Hg_chrom4_TN10mRNA_7091
Organism: Heterodera glycines Gene Locus: chr4:128415-131339 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.491 | 1.31 | 0.256 | 2.914 | 0.822 | 1.264 | 1.09 | 2.113 | 0.782 | 2.094 | 0.96 | 1.657 | 1.369 | 0.677 | 0.862 | 0.805 | 0.346 | 0.64 | 1.083 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6719
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.205
|
0.051
|
0.050
|
0.226
|
0.387
|
0.590
|
0.262
|
0.012
|
0.529
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003748
|
2.000
|
1.000
|
Hsc_gene_24771.t1
|
Hsc_gene_24771.t1
|
— | — |
KAI3413307.1 hypothetical protein GPALN_016351 [Globodera pallida]
|
MCU0806551
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.919|GO:0016020_0.840|GO:0005886_0.810|GO:0071944_0.810|GO:0030054_0.590|GO:0045202_0.577|GO:0098590_0.573|GO:0042995_0.562|GO:0120025_0.562|GO:0043005_0.555|GO:0036477_0.551|GO:0044297_0.550|GO:0043025_0.548|GO:0032809_0.540|GO:0044298_0.540
|
IPR022559+69-100+
|
— |
PF10853+69-100+Protein_of_unknown_function_(DUF2650)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-142
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
15996.860
|
8.368
|
9.000
|
21.127
|
13.380
|
39.437
|
60.563
|
14.789
|
6.338
|
44.366
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
138.892
|
3.963
|
52.228
|
47.747
|
15.948
|
8.520
|
9.513
|
351.716
|
125.266
|
330.088
|
242.307
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.484
|
3.450
|
— |
-1.618
|
-0.887
|
— |
5.264
|
-5.069
|
— | — | — | — | — |
No JSON data available for plots.