Hg_chrom4_TN10mRNA_7092
Organism: Heterodera glycines Gene Locus: chr4:132061-139187 Feature type: polypeptideProtein Sequence
Length: 589
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 0.948 | 0.864 | 1.171 | 0.453 | 1.088 | 0.627 | 1.104 | 1.622 | 1.262 | 0.489 | 1.898 | 0.849 | 0.979 | 1.386 | 1.213 | 1.364 | 1.003 | 1.698 | 0.949 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6720
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.691
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-32
|
— |
0.999
|
— |
3.000
|
0.065
|
0.199
|
0.020
|
0.186
|
0.217
|
0.140
|
0.184
|
0.036
|
0.746
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003749
|
1.000
|
2.000
|
Hsc_gene_24769.t1;Hsc_gene_24769.t2
|
Hsc_gene_24769.t1;Hsc_gene_24769.t2
|
— |
G5EBR3.1 Glutamate-gated chloride channel alpha [Caenorhabditis elegans]
|
KAF7634234.1 Ig-like domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.945|GO:0005575_0.920|GO:0110165_0.920|GO:0009987_0.914|GO:0016020_0.892|GO:0071944_0.847|GO:0005886_0.832|GO:0003674_0.809|GO:0051179_0.794|GO:0065007_0.794|GO:0006810_0.792|GO:0051234_0.792|GO:0050789_0.768|GO:0055085_0.745|GO:0023052_0.734|GO:0007154_0.732|GO:0006811_0.725|GO:0034220_0.717|GO:0050896_0.705|GO:0050794_0.702|GO:0030054_0.686|GO:0032501_0.677|GO:0005215_0.673|GO:0005216_0.673|GO:0015075_0.673|GO:0015267_0.673|GO:0022803_0.673|GO:0022857_0.673|GO:0051716_0.651|GO:0007267_0.649|GO:0045202_0.647|GO:0022836_0.637|GO:0098916_0.622|GO:0099536_0.622|GO:0099537_0.622|GO:0007268_0.614|GO:0007165_0.603|GO:0015276_0.598|GO:0022834_0.598|GO:0098660_0.598|GO:0065008_0.586|GO:0005230_0.569|GO:0015318_0.569|GO:0015698_0.556|GO:0006820_0.555|GO:0006821_0.555|GO:0098656_0.550|GO:0008509_0.540|GO:0042391_0.539|GO:0003008_0.532|GO:0098661_0.529|GO:0005253_0.527|GO:1902476_0.527|GO:0015103_0.514|GO:0015108_0.511
|
IPR006028+259-279_285-306_319-340+|IPR006029+263-348+|IPR006201+30-346_43-410_93-109_127-138_173-187_250-262+|IPR006202+40-255+|IPR007110+149-257+|IPR018000+173-187+|IPR036719+258-576+|IPR036734+38-253_39-255+|IPR038050+254-453+|IPR044721+258-346+
|
— |
PF02931+40-255+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+263-348+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000084+254-363+Glutamate-gated_chloride_channel_subunit_beta|G3DSA:2.70.170.10:FF:000038+38-253+Glutamate-gated_chloride_channel_alpha
|
PTHR18945+43-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-589
|
4tnw_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
66086.430
|
8.776
|
21.500
|
19.694
|
10.696
|
44.822
|
55.178
|
12.224
|
7.470
|
52.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
87.574
|
51.800
|
186.177
|
109.180
|
50.963
|
38.885
|
182.724
|
76.938
|
6.043
|
117.354
|
69.649
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.616
|
0.939
|
-0.661
|
-1.133
|
— |
2.243
|
0.881
|
1.390
|
-4.418
|
4.431
|
— | — | — |