Hg_chrom4_TN10mRNA_7107
Organism: Heterodera glycines Gene Locus: chr4:270704-272846 Feature type: polypeptideProtein Sequence
Length: 288
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.484 | 1.615 | 1.263 | 0.599 | 0.926 | 1.514 | 0.372 | 0.521 | 1.852 | 1.548 | 0.789 | 1.634 | 1.64 | 0.935 | 1.205 | 0.942 | 0.74 | 0.894 | 0.801 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6734
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.880
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.530
|
0.238
|
0.008
|
0.680
|
0.078
|
0.085
|
0.064
|
0.029
|
0.089
|
0.210
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000308
|
1.000
|
8.000
|
Hsc_gene_14221.t1;Hsc_gene_14221.t2;Hsc_gene_14221.t3;Hsc_gene_14221.t4;Hsc_gene_16169.t1;Hsc_gene_3018.t1;Hsc_gene_9593.t1;Hsc_gene_9630.t1
|
— | — | — |
KAI3418348.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000210+145-243+|IPR011333+110-273_145-244+
|
— |
PF00651+145-243+BTB/POZ_domain
|
— |
PTHR22744+122-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-288
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
33270.330
|
5.446
|
-2.500
|
24.653
|
10.069
|
48.611
|
51.389
|
12.153
|
12.500
|
44.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
136.696
|
248.841
|
151.541
|
225.498
|
129.099
|
172.525
|
571.490
|
71.963
|
0.000
|
8.936
|
5.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.945
|
-0.279
|
0.682
|
-0.836
|
0.434
|
1.736
|
-1.361
|
3.127
|
— |
8.674
|
— | — | — |
No JSON data available for plots.