Hg_chrom4_TN10mRNA_7108
Organism: Heterodera glycines Gene Locus: chr4:274597-276822 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.555 | 1.665 | 0.781 | 0.411 | 1.193 | 1.285 | 0.54 | 1.074 | 1.538 | 1.064 | 1.302 | 2.387 | 2.32 | 0.872 | 0.779 | 1.193 | 0.587 | 0.579 | 1.285 | 0.632 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6735
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KKSVEAIENQIIKRKSE
|
— | — |
16-76
|
0.998
|
— | — |
0.106
|
— | — |
0.188
|
0.290
|
0.096
|
0.312
|
0.147
|
0.064
|
0.178
|
0.004
|
0.252
|
0.510
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001251
|
2.000
|
3.000
|
Hsc_gene_17985.t1;Hsc_gene_17985.t2;Hsc_gene_17985.t3
|
Hsc_gene_10915.t2;Hsc_gene_10919.t1;Hsc_gene_10922.t1;Hsc_gene_10924.t1;Hsc_gene_10925.t1;Hsc_gene_17981.t1;Hsc_gene_17982.t1;Hsc_gene_17983.t1;Hsc_gene_17986.t1;Hsc_gene_17990.t1;Hsc_gene_9590.t1
|
— | — | — |
CAB4404041
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
48610.790
|
8.566
|
8.500
|
26.014
|
14.320
|
50.119
|
49.881
|
14.558
|
11.456
|
42.243
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
59.412
|
0.462
|
4.107
|
99.326
|
58.081
|
7.957
|
22.638
|
3.903
|
185.660
|
47.007
|
106.429
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.916
|
7.620
|
4.712
|
-0.803
|
-2.852
|
1.521
|
— |
2.685
|
— | — | — | — | — |
No JSON data available for plots.