Hg_chrom4_TN10mRNA_7112
Organism: Heterodera glycines Gene Locus: chr4:286469-288377 Feature type: polypeptideProtein Sequence
Length: 615
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.475 | 0.908 | 0.089 | 0.056 | 5.014 | 0.792 | 0.465 | 0.0 | 0.145 | 0.132 | 4.607 | 0.096 | 0.09 | 0.719 | 0.697 | 0.372 | 0.453 | 0.074 | 0.0 | 0.048 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6738
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17984
|
Hg_chrom4_TN10mRNA_7112
|
2-Not_Clustered
|
0.632
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
nucleus
|
AKAQPGKEEKQAVKAEEKEEEKPKDKKEKRGAEAEEQKEGGEKKGEEKPKGKKEKRAAEKEEKKTENKEAEKKENEEQKPAGKKEKRAAEKGEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKTENKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKSESKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEERKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKSESKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKKENEEQKPAGKKEKRAAEKEEKKTENKEAEKKENEEQKPAGKKEKRAAEKEEKKTENKEAEKKENEEQKPAGKKEKRAAEKEEKKTESKEAEKTKPVKETK
|
— | — | — | — |
1-20
|
0.994
|
1.000
|
0.000
|
0.000
|
0.379
|
0.148
|
0.031
|
0.474
|
0.086
|
0.009
|
0.025
|
0.002
|
0.176
|
0.923
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002033
|
3.000
|
1.000
|
Hsc_gene_10918.t1
|
Hsc_gene_17984.t1
|
— | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-615
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
71051.080
|
9.818
|
20.000
|
64.390
|
0.488
|
76.748
|
23.252
|
33.821
|
30.569
|
30.732
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
8477.837
|
1490.771
|
667.528
|
15192.490
|
20799.704
|
36047.195
|
4587.300
|
4010.787
|
612.875
|
5582.465
|
3452.641
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.390
|
3.212
|
4.619
|
0.420
|
0.810
|
-2.964
|
-3.291
|
— |
-3.309
|
4.747
|
2.128
|
— | — |