Hg_chrom4_TN10mRNA_7118
Organism: Heterodera glycines Gene Locus: chr4:309011-309402 Feature type: polypeptideProtein Sequence
Length: 110
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.057 | 0.992 | 0.313 | 2.273 | 0.0 | 3.139 | 1.364 | 0.808 | 0.737 | 1.791 | 1.07 | 0.505 | 0.175 | 0.557 | 0.779 | 0.298 | 0.413 | 0.699 | 0.267 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6743
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_10918
|
Hg_chrom4_TN10mRNA_7118
|
7-Not_Clustered
|
0.931
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
nucleus
|
KREAEVEEGKKEKKA,GKKEKKAAEEEVGKKEKRGSGGG
|
— | — | — | — |
1-20
|
0.996
|
1.000
|
0.000
|
0.000
|
0.594
|
0.327
|
0.118
|
0.337
|
0.168
|
0.033
|
0.056
|
0.004
|
0.099
|
0.714
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002033
|
3.000
|
1.000
|
Hsc_gene_10918.t1
|
Hsc_gene_10916.t1;Hsc_gene_10918.t1
|
— | — | — |
MCC6884443
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-110
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
11174.160
|
5.013
|
-3.500
|
36.364
|
6.364
|
48.182
|
51.818
|
17.273
|
19.091
|
54.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
4988.209
|
146.417
|
40589.643
|
578.140
|
88.304
|
48.778
|
2.232
|
328.519
|
6611.895
|
1196.232
|
3517.231
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.883
|
1.843
|
-6.023
|
-2.745
|
-0.839
|
-4.442
|
2.654
|
-7.064
|
— |
-3.371
|
— | — | — |