Hg_chrom4_TN10mRNA_7119
Organism: Heterodera glycines Gene Locus: chr4:310506-323389 Feature type: polypeptideProtein Sequence
Length: 1,862
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.599 | 1.084 | 0.556 | 1.477 | 1.35 | 0.467 | 0.967 | 1.408 | 1.306 | 1.538 | 1.58 | 1.387 | 0.537 | 0.833 | 0.829 | 0.88 | 0.651 | 1.281 | 0.806 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6744
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom4_TN10mRNA_7119
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKKR,KKEAAVTNAKTKKAYR,KKEKESKNKNKSKERKA,KNKTKKKKKAKKTKKEKNGEKE
|
— | — | — | — |
1-20
|
0.975
|
1.000
|
0.000
|
0.000
|
0.454
|
0.165
|
0.011
|
0.596
|
0.109
|
0.186
|
0.152
|
0.038
|
0.158
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001252
|
2.000
|
3.000
|
Hsc_gene_10914.t1;Hsc_gene_10921.t1;Hsc_gene_17980.t1
|
Hsc_gene_10914.t1;Hsc_gene_10920.t1
|
— | — |
KAI3420101.1 hypothetical protein GPALN_003427 [Globodera pallida]
|
CAE6433125
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR043519+1732-1809_1741-1852+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
389-572;1303-1488
|
3.000
|
1-388;573-1302;1489-1862
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
216719.290
|
6.833
|
7.000
|
30.988
|
11.332
|
54.296
|
45.704
|
16.165
|
14.823
|
41.622
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
746.027
|
1.680
|
179.183
|
143.521
|
31.345
|
9.488
|
5.667
|
10.521
|
3263.689
|
673.075
|
1783.338
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.507
|
6.277
|
— |
-2.226
|
-1.708
|
— | — | — |
2.192
|
-4.350
|
-4.069
|
— | — |