SCN Proteipedia

Hg_chrom4_TN10mRNA_7126

Organism: Heterodera glycines Gene Locus: chr4:359737-370278 Feature type: polypeptide

Protein Sequence

Length: 960

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.751	1.623	0.909	0.934	0.99	1.496	0.744	1.979	0.995	1.084	0.647	1.838	0.926	1.002	1.042	1.533	0.615	0.852	0.481	0.766	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6750	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	2-22	0.874	24-45	0.998	—	—	0.000	—	—	0.286	0.263	0.027	0.685	0.158	0.321	0.224	0.249	0.339	0.061

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003751	1.000	2.000	Hsc_gene_16175.t1;Hsc_gene_16175.t2	Hsc_gene_16175.t1;Hsc_gene_16175.t2	—	Q19013.2 Putative glutaminase 2 [Caenorhabditis elegans]	KAH7725993.1 glutaminase liver isoform [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004359\|GO:0005515\|GO:0006541	GO:0005575_0.852\|GO:0110165_0.830\|GO:0008150_0.762\|GO:0009987_0.673\|GO:0005622_0.656\|GO:0016020_0.650\|GO:0043226_0.596\|GO:0043229_0.575\|GO:0003674_0.574\|GO:0043227_0.554\|GO:0065007_0.550\|GO:0050789_0.541\|GO:0043231_0.538\|GO:0005737_0.530	IPR002110+518-610_546-570_546-575_580-609+\|IPR012338+174-507_183-491+\|IPR015868+82-608_184-490_190-487_201-490+\|IPR036770+514-603_516-611+\|IPR041541+87-179+	SM00248+546-575_580-609+	PF04960+201-490+Glutaminase\|PF12796+518-610+Ankyrin_repeats_(3_copies)\|PF17959+87-179+EF-hand_domain	G3DSA:1.25.40.20:FF:000069+512-604+Glutaminase,_isoform_E\|G3DSA:3.40.710.10:FF:000008+174-507+Glutaminase,_isoform_E	PTHR12544+82-608+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-54;571-697;761-960	2.000	55-570;698-760	5uqe_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.810	106592.490	6.672	4.000	24.271	10.521	51.562	48.438	13.333	10.938	52.708

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	turquoise	601.199	258.092	1041.521	247.712	258.329	140.282	267.707	2908.582	44.992	675.668	405.378

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.786	-0.196	-1.965	—	-0.867	0.944	4.264	-3.295	-4.024	—	—	—	—

No JSON data available for plots.

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