Hg_chrom4_TN10mRNA_7134
Organism: Heterodera glycines Gene Locus: chr4:396907-397274 Feature type: polypeptideProtein Sequence
Length: 81
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.436 | 0.0 | 0.426 | 0.206 | 1.266 | 2.939 | 0.0 | 0.823 | 0.834 | 0.374 | 2.179 | 1.715 | 0.712 | 0.252 | 1.587 | 0.607 | 0.561 | 0.95 | 2.542 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6757
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-Not_Clustered
|
0.782
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-27
|
0.997
|
1.000
|
0.000
|
0.000
|
0.213
|
0.231
|
0.128
|
0.174
|
0.164
|
0.089
|
0.121
|
0.019
|
0.148
|
0.942
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008274
|
1.000
|
1.000
|
Hsc_gene_9134.t1
|
Hsc_gene_13674.t1;Hsc_gene_13695.t1;Hsc_gene_13706.t1;Hsc_gene_19304.t1;Hsc_gene_23195.t1;Hsc_gene_9134.t1
|
— | — | — |
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
72-81
|
1.000
|
1-71
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
8281.230
|
8.819
|
2.000
|
4.938
|
16.049
|
30.864
|
69.136
|
3.704
|
1.235
|
60.494
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
125.957
|
12.115
|
327.967
|
150.505
|
469.862
|
49.224
|
8.510
|
34.995
|
4.112
|
153.034
|
89.210
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.532
|
3.499
|
-1.015
|
1.609
|
-3.240
|
-2.520
|
— |
-1.897
|
-5.324
|
5.350
|
— | — | — |