Hg_chrom4_TN10mRNA_7137
Organism: Heterodera glycines Gene Locus: chr4:406399-408412 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.191 | 0.49 | 0.602 | 1.039 | 0.502 | 2.008 | 3.335 | 0.602 | 0.067 | 0.285 | 0.183 | 0.532 | 0.418 | 3.418 | 0.738 | 0.516 | 0.741 | 0.639 | 0.232 | 0.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6760
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
32-101
|
0.859
|
— | — |
0.000
|
— | — |
0.056
|
0.059
|
0.009
|
0.111
|
0.486
|
0.253
|
0.293
|
0.002
|
0.638
|
0.328
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008276
|
1.000
|
1.000
|
Hsc_gene_9130.t1
|
Hsc_gene_9130.t1
|
C52D10.13
|
P20630.1 Cuticle collagen 12 [Caenorhabditis elegans]
|
KAF7626069.1 COLlagen [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+20-72_23-72+|IPR050632+26-330+
|
SM01088+20-72+
|
PF01484+23-72+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+26-330+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;76-332
|
1.000
|
8-75
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
30947.580
|
5.227
|
-3.000
|
12.349
|
4.217
|
30.422
|
69.578
|
6.024
|
6.325
|
76.807
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
11449.150
|
5091.023
|
232.363
|
100.390
|
170.647
|
83193.348
|
21.570
|
41981.883
|
50.447
|
1005.486
|
596.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.681
|
-5.800
|
-1.103
|
0.731
|
8.945
|
-11.888
|
-1.104
|
-10.764
|
-4.469
|
— | — | — | — |
No JSON data available for plots.