Hg_chrom4_TN10mRNA_7145
Organism: Heterodera glycines Gene Locus: chr4:448995-457101 Feature type: polypeptideProtein Sequence
Length: 785
(Signal peptide: 1-50)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 0.77 | 0.973 | 0.483 | 0.955 | 1.601 | 0.622 | 2.42 | 0.906 | 1.326 | 0.502 | 2.323 | 0.885 | 1.421 | 1.612 | 1.001 | 1.044 | 1.004 | 0.294 | 0.45 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6768
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-50
|
0.687
|
0.719
|
1.000
|
1.000
|
0.201
|
0.015
|
0.007
|
0.315
|
0.275
|
0.445
|
0.252
|
0.055
|
0.771
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008280
|
1.000
|
1.000
|
Hsc_gene_9117.t1
|
Hsc_gene_9115.t1;Hsc_gene_9117.t1
|
— | — |
KAF7634198.1 Peptidase S72 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016010
|
— |
IPR008465+444-649+|IPR030398+392-520+
|
— |
PF05454+444-649+Dystroglycan_(Dystrophin-associated_glycoprotein_1)
|
— |
PTHR21559+273-692+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;600-785
|
1.000
|
19-599
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
88391.880
|
7.830
|
20.000
|
27.134
|
9.936
|
50.064
|
49.936
|
16.051
|
11.083
|
49.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
1188.324
|
1919.915
|
833.848
|
893.882
|
1517.430
|
3145.577
|
1447.409
|
1999.866
|
401.173
|
488.815
|
451.254
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.430
|
-1.240
|
0.207
|
0.732
|
1.067
|
-1.112
|
-0.760
|
-0.325
|
— | — | — | — | — |