Hg_chrom4_TN10mRNA_7151
Organism: Heterodera glycines Gene Locus: chr4:484613-485727 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.616 | 0.808 | 0.913 | 0.533 | 0.965 | 1.287 | 1.011 | 1.544 | 0.858 | 1.513 | 0.819 | 1.363 | 0.751 | 0.594 | 0.709 | 0.827 | 1.013 | 1.17 | 0.594 | 0.341 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6773
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.530
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.766
|
0.633
|
0.036
|
0.482
|
0.190
|
0.087
|
0.226
|
0.039
|
0.142
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008282
|
1.000
|
1.000
|
Hsc_gene_17999.t1
|
Hsc_gene_17999.t1
|
— |
P56904.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Sinorhizobium meliloti 1021]
|
ACZ34279.1 HMP-P kinase/HMP-PP kinase [Heterodera glycines]
|
MBK9586819
|
0.780
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008972|GO:0009228
|
GO:0008150_0.723|GO:0005575_0.709|GO:0110165_0.693|GO:0009987_0.657|GO:0003674_0.611|GO:0005622_0.600|GO:0008152_0.590|GO:0005737_0.586|GO:0044237_0.563|GO:0009058_0.545|GO:0044281_0.531|GO:0044249_0.526
|
IPR004399+8-258_8-259+|IPR013749+15-257+|IPR029056+1-259_8-256+
|
— |
PF08543+15-257+Phosphomethylpyrimidine_kinase
|
G3DSA:3.40.1190.20:FF:000003+3-259+Phosphomethylpyrimidine_kinase_ThiD
|
PTHR20858+7-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
27443.320
|
6.293
|
-1.000
|
22.780
|
7.722
|
43.243
|
56.757
|
11.969
|
10.811
|
55.212
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
20.763
|
50.266
|
36.413
|
17.546
|
15.020
|
24.009
|
42.709
|
32.625
|
1.028
|
8.096
|
5.067
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.691
|
-1.655
|
-0.947
|
— |
0.691
|
0.842
|
— | — | — |
3.994
|
— | — | — |
No JSON data available for plots.