Hg_chrom4_TN10mRNA_7152
Organism: Heterodera glycines Gene Locus: chr4:487181-487943 Feature type: polypeptideProtein Sequence
Length: 78
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.149 | 0.298 | 0.699 | 0.442 | 0.427 | 1.315 | 0.611 | 6.41 | 0.285 | 1.386 | 0.389 | 0.754 | 1.068 | 2.219 | 1.047 | 0.916 | 1.051 | 0.583 | 3.945 | 2.64 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6774
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.281
|
0.856
|
0.005
|
0.428
|
0.063
|
0.055
|
0.048
|
0.019
|
0.104
|
0.278
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008283
|
1.000
|
1.000
|
Hsc_gene_18000.t1
|
Hsc_gene_18000.t1
|
— | — |
CAD2198029.1 unnamed protein product [Meloidogyne enterolobii];CAD2207734.1 unnamed protein product [Meloidogyne enterolobii]
|
MEC8458703
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-78
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
9493.680
|
8.157
|
6.000
|
26.923
|
30.769
|
46.154
|
53.846
|
20.513
|
6.410
|
41.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
741.479
|
37.827
|
1347.511
|
247.068
|
52.979
|
391.336
|
46.101
|
6434.486
|
44.819
|
1.365
|
19.988
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.925
|
2.569
|
-2.339
|
-2.252
|
2.897
|
-3.075
|
3.940
|
-6.985
|
— | — | — | — | — |
No JSON data available for plots.