Hg_chrom4_TN10mRNA_7159
Organism: Heterodera glycines Gene Locus: chr4:529682-531887 Feature type: polypeptideProtein Sequence
Length: 435
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.962 | 1.23 | 0.627 | 1.189 | 0.728 | 1.12 | 0.465 | 1.494 | 1.533 | 1.709 | 0.627 | 2.434 | 1.022 | 0.973 | 1.173 | 0.722 | 1.168 | 0.906 | 0.354 | 0.879 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6780
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRPGDILIFVTGQKRLKG,KRLKGLSANSQGHDRMRRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.495
|
0.356
|
0.061
|
0.737
|
0.102
|
0.027
|
0.111
|
0.023
|
0.086
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000540
|
5.000
|
2.000
|
Hsc_gene_12557.t1;Hsc_gene_8847.t1
|
— | — |
Q20875.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Caenorhabditis elegans]
|
KAH7699885.1 DEAD box protein/DEAH protein box helicase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.846|GO:0110165_0.845|GO:0008150_0.790|GO:0016020_0.753|GO:0005622_0.732|GO:0009987_0.702|GO:0043226_0.669|GO:0043229_0.654|GO:0043227_0.646|GO:0043231_0.628|GO:0008152_0.538|GO:0003674_0.528|GO:0044238_0.513|GO:0044237_0.512
|
IPR007502+362-435+|IPR014001+1-135+|IPR027417+2-137_14-422_138-239_261-321+|IPR048333+363-391+
|
SM00847+362-435+
|
PF04408+363-391+Helicase_associated_domain_(HA2),_winged-helix|PF21010+392-431+Helicase_associated_domain_(HA2),_ratchet-like
|
— |
PTHR18934+10-430+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-435
|
5n9f_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
48919.420
|
8.531
|
15.500
|
20.690
|
10.115
|
42.529
|
57.471
|
12.874
|
7.816
|
47.586
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
10.785
|
0.157
|
4.109
|
2.128
|
0.241
|
0.000
|
0.205
|
0.548
|
0.000
|
44.413
|
25.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.519
|
3.648
|
— |
-3.146
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.