Hg_chrom4_TN10mRNA_7160
Organism: Heterodera glycines Gene Locus: chr4:535635-536773 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.479 | 0.957 | 0.524 | 0.142 | 1.783 | 0.844 | 0.294 | 0.617 | 2.103 | 0.945 | 3.928 | 1.21 | 1.257 | 0.396 | 1.092 | 0.705 | 0.337 | 0.125 | 1.583 | 1.331 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6781
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKYFKIKKA,RKFEAIKEKLKQKGK,KKLEIDYEKLRKWKS,RKWKSALLPKHKKTRN,KKKEFIERSNEFKRLYK,RRWKKELMPKYYKIKVK,KREIIRKFEAIKEKLKQK,RKIGRILGIYREKIYKWKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.610
|
0.287
|
0.062
|
0.422
|
0.167
|
0.059
|
0.118
|
0.028
|
0.209
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000042
|
25.000
|
0.000
|
0.000
|
— | — | — |
KAI3417802.1 hypothetical protein GPALN_012077 [Globodera pallida]
|
HEY5186861
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-243
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
29781.390
|
10.802
|
44.500
|
46.091
|
12.346
|
60.494
|
39.506
|
32.510
|
13.580
|
23.868
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
158.112
|
1.539
|
15.079
|
65.210
|
21.230
|
2.799
|
0.609
|
0.560
|
541.190
|
245.711
|
372.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.066
|
5.273
|
2.221
|
-1.648
|
-2.908
|
— | — | — | — |
-2.931
|
-3.378
|
— | — |
No JSON data available for plots.