Hg_chrom4_TN10mRNA_7161
Organism: Heterodera glycines Gene Locus: chr4:541025-547527 Feature type: polypeptideProtein Sequence
Length: 688
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.896 | 1.014 | 0.899 | 0.601 | 1.55 | 2.124 | 0.744 | 2.253 | 1.163 | 0.727 | 0.903 | 1.026 | 1.009 | 1.314 | 1.009 | 0.581 | 1.096 | 0.969 | 0.112 | 0.556 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6782
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.519
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— |
EKRRRR,KRKKRNANKKKPPKTRREK,RKKRNANKKKPPKTRREKH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.373
|
0.170
|
0.013
|
0.390
|
0.105
|
0.279
|
0.325
|
0.002
|
0.591
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008284
|
1.000
|
1.000
|
Hsc_gene_18002.t1
|
Hsc_gene_18002.t1;Hsc_gene_2314.t1
|
— | — |
KAI1703990.1 arrestin domain-containing protein 17 [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR011021+31-167+|IPR011022+202-431+|IPR014752+25-169_182-310+|IPR014756+31-187+|IPR050357+29-538+
|
SM01017+202-431+
|
PF00339+31-167+Arrestin_(or_S-antigen),_N-terminal_domain
|
— |
PTHR11188+29-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
249-341;455-688
|
2.000
|
1-248;342-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
77033.150
|
6.096
|
-7.500
|
29.651
|
10.174
|
53.052
|
46.948
|
15.407
|
14.244
|
48.983
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1576.592
|
3840.535
|
4245.760
|
892.103
|
613.147
|
1061.719
|
1492.635
|
2940.706
|
1522.445
|
98.277
|
708.635
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.243
|
-2.144
|
-0.573
|
0.807
|
0.501
|
1.374
|
-0.840
|
3.826
|
— | — | — | — |
No JSON data available for plots.