Hg_chrom4_TN10mRNA_7171
Organism: Heterodera glycines Gene Locus: chr4:644367-651611 Feature type: polypeptideProtein Sequence
Length: 702
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 0.861 | 1.554 | 0.442 | 0.95 | 2.447 | 0.577 | 1.567 | 0.76 | 1.251 | 0.95 | 1.425 | 0.989 | 0.822 | 1.512 | 0.936 | 1.004 | 0.971 | 0.548 | 0.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6790
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRCSLYDQLKKLKKSQK,RRKSQQLRDALKKRRTQ,KKLKKSQKLSRNQRRKMRRGKKEKQG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.878
|
0.090
|
0.003
|
0.316
|
0.018
|
0.032
|
0.062
|
0.006
|
0.061
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000847
|
2.000
|
4.000
|
Hsc_gene_11868.t1;Hsc_gene_18025.t1;Hsc_gene_25715.t1;Hsc_gene_5379.t1
|
Hsc_gene_20277.t1;Hsc_gene_20277.t2;Hsc_gene_20277.t3;Hsc_gene_5379.t1
|
— | — |
KAI3411011.1 hypothetical protein GPALN_003095 [Globodera pallida]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-62;217-357;478-532;683-702
|
3.000
|
63-216;358-477;533-682
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
80442.410
|
7.084
|
7.000
|
31.054
|
9.117
|
56.980
|
43.020
|
16.809
|
14.245
|
46.866
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
paleturquoise
|
493.439
|
626.183
|
597.800
|
717.401
|
798.113
|
613.911
|
858.792
|
446.248
|
415.180
|
100.491
|
235.358
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.297
|
— |
0.372
|
0.122
|
-0.364
|
0.496
|
-0.565
|
1.088
|
— | — | — | — | — |
No JSON data available for plots.