Hg_chrom4_TN10mRNA_7177
Organism: Heterodera glycines Gene Locus: chr4:677205-682125 Feature type: polypeptideProtein Sequence
Length: 495
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 1.926 | 0.918 | 1.115 | 0.572 | 2.176 | 0.818 | 0.909 | 0.943 | 0.792 | 0.765 | 2.139 | 1.122 | 1.204 | 0.454 | 0.981 | 0.894 | 1.347 | 0.466 | 0.713 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
3-Not_Clustered
|
0.515
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
lysosome_vacuole
|
chloroplast
|
PNKKGVKVGSKMKLQQKLKSGVKSKDLGEKK
|
— | — |
21-86
|
0.772
|
1-27
|
0.832
|
0.999
|
0.000
|
0.000
|
0.264
|
0.098
|
0.035
|
0.403
|
0.398
|
0.439
|
0.427
|
0.004
|
0.378
|
0.276
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003758
|
1.000
|
2.000
|
Hsc_gene_791.t1;Hsc_gene_791.t2
|
— | — | — |
XP_052192498.1 thaumatin-like protein 1b isoform X2 [Diospyros lotus]
|
KAJ6530607
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.957|GO:0050896_0.836|GO:0042221_0.735|GO:1901700_0.708|GO:0033993_0.687|GO:0070542_0.670|GO:1904550_0.670
|
IPR001938+283-493_318-492_325-492+|IPR037176+282-492+
|
SM00205+283-493+
|
PF00314+325-492+Thaumatin_family
|
— |
PTHR31013+283-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-112
|
1.000
|
113-495
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
53998.120
|
6.223
|
-1.500
|
17.576
|
8.889
|
46.667
|
53.333
|
9.091
|
8.485
|
58.182
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
820.191
|
5.362
|
186.570
|
43.452
|
26.790
|
14.497
|
37.719
|
41.980
|
4118.641
|
365.714
|
1974.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.892
|
2.882
|
-1.992
|
-0.729
|
-0.871
|
1.389
|
1.424
|
— |
3.406
|
-6.431
|
-3.367
|
-5.943
|
— |