SCN Proteipedia

Hg_chrom4_TN10mRNA_7181

Organism: Heterodera glycines Gene Locus: chr4:712343-717278 Feature type: polypeptide

Protein Sequence

Length: 520

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.85	1.118	0.874	0.464	0.897	1.923	0.641	1.346	1.111	1.169	0.641	1.131	0.588	1.516	0.903	1.456	1.166	0.991	0.444	0.622	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6798	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PKPS	—	—	54-84	0.996	—	—	0.000	—	—	0.959	0.117	0.010	0.248	0.040	0.021	0.021	0.020	0.011	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008291	1.000	1.000	Hsc_gene_22624.t1	—	—	Q6VUC0.1 Transcription factor AP-2-epsilon [Homo sapiens]	KAF7640213.1 TF_AP-2 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0005634\|GO:0006355	GO:0008150_0.875\|GO:0009987_0.834\|GO:0065007_0.757\|GO:0005575_0.749\|GO:0050789_0.745\|GO:0110165_0.743\|GO:0050794_0.735\|GO:0005622_0.680\|GO:0003674_0.663\|GO:0048518_0.657\|GO:0008152_0.656\|GO:0043170_0.656\|GO:0019222_0.652\|GO:0031323_0.649\|GO:0044237_0.649\|GO:0044238_0.649\|GO:0060255_0.646\|GO:0048522_0.645\|GO:0005488_0.644\|GO:0080090_0.643\|GO:0009058_0.639\|GO:0043226_0.632\|GO:0009059_0.630\|GO:0010467_0.630\|GO:0044249_0.630\|GO:0009889_0.625\|GO:0010556_0.625\|GO:0031326_0.625\|GO:0043229_0.625\|GO:0010468_0.622\|GO:0006139_0.621\|GO:0034654_0.620\|GO:0009893_0.617\|GO:0090304_0.612\|GO:0016070_0.610\|GO:0031325_0.608\|GO:0141187_0.608\|GO:0032774_0.607\|GO:0010604_0.605\|GO:0019219_0.604\|GO:0032501_0.603\|GO:0006351_0.601\|GO:0051252_0.601\|GO:0009891_0.600\|GO:0031328_0.600\|GO:0032502_0.599\|GO:2001141_0.593\|GO:0006355_0.592\|GO:0010557_0.592\|GO:0016020_0.591\|GO:0045935_0.581\|GO:0051254_0.577\|GO:0006366_0.574\|GO:0006357_0.573\|GO:1902680_0.570\|GO:0045893_0.568\|GO:0045944_0.558\|GO:0048856_0.551\|GO:0097159_0.542\|GO:0003676_0.527\|GO:0007275_0.525\|GO:0003677_0.508\|GO:0043565_0.508\|GO:0003690_0.507\|GO:1990837_0.507\|GO:0048731_0.506	IPR004979+5-488+\|IPR013854+283-487_321-335_336-351_352-366+	—	PF03299+283-487+Transcription_factor_AP-2	—	PTHR10812+5-488+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-247	1.000	248-520	8j0q_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.788	56739.780	6.387	-1.000	21.538	7.500	51.154	48.846	11.346	10.192	55.385

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	blue	138.289	6.864	6.538	6.660	7.290	23.541	514.105	6.078	24.847	372.224	223.348

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	1.708	4.459	-2.077	6.552	-4.033	—	-5.440	—	—

No JSON data available for plots.

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