Hg_chrom4_TN10mRNA_7185
Organism: Heterodera glycines Gene Locus: chr4:747212-750842 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 1.426 | 1.115 | 0.092 | 1.2 | 0.821 | 0.889 | 1.333 | 1.185 | 1.514 | 1.212 | 1.725 | 1.778 | 0.513 | 0.435 | 0.8 | 0.699 | 0.97 | 0.205 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6802
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.319
|
0.251
|
0.172
|
0.569
|
0.197
|
0.168
|
0.148
|
0.027
|
0.174
|
0.844
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002038
|
2.000
|
2.000
|
Hsc_gene_22620.t1;Hsc_gene_22620.t2
|
Hsc_gene_22620.t1
|
— |
P35237.3 Serpin B6 [Homo sapiens]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.773|GO:0110165_0.765|GO:0008150_0.731|GO:0003674_0.602|GO:0005622_0.583|GO:0016020_0.557|GO:0009987_0.554|GO:0005737_0.537|GO:0005488_0.512
|
IPR000215+14-369+|IPR023796+14-373_20-375+|IPR036186+10-372+|IPR042178+18-338+|IPR042185+177-366+
|
SM00093+20-375+
|
PF00079+14-373+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+14-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
41410.320
|
5.286
|
-7.000
|
26.133
|
11.733
|
45.333
|
54.667
|
12.800
|
13.333
|
48.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1093.337
|
152.077
|
349.536
|
193.589
|
75.337
|
616.893
|
443.311
|
6820.135
|
903.771
|
861.443
|
879.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
0.211
|
-0.744
|
-1.397
|
3.050
|
-0.466
|
3.369
|
-3.803
|
— | — | — | — | — |
No JSON data available for plots.