Hg_chrom4_TN10mRNA_7190
Organism: Heterodera glycines Gene Locus: chr4:775017-782172 Feature type: polypeptideProtein Sequence
Length: 539
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.812 | 0.911 | 1.088 | 0.649 | 1.665 | 0.861 | 0.928 | 1.113 | 0.802 | 1.153 | 1.964 | 1.082 | 0.999 | 0.454 | 1.087 | 1.004 | 0.984 | 0.571 | 0.764 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6806
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_22614
|
— |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KVKK,RKLLQQEDKATTKRKVPR,KKNNRKNNRHGKGGGQHKIHVSQNGHKTTNKGIKLKEKRKLRIKSSKDMGGMRSKVK
|
— | — | — | — |
1-18
|
0.912
|
1.000
|
0.000
|
0.000
|
0.285
|
0.063
|
0.047
|
0.355
|
0.209
|
0.253
|
0.285
|
0.003
|
0.189
|
0.569
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008296
|
1.000
|
1.000
|
Hsc_gene_22614.t1
|
— | — | — |
HEX3922574.1 thaumatin family protein [Streptosporangiaceae bacterium]
|
OAE26947
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.960|GO:0050896_0.835
|
IPR001938+304-531_308-530_355-530+|IPR037176+303-530+
|
SM00205+304-531+
|
PF00314+308-530+Thaumatin_family
|
— |
PTHR31013+153-532+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-126
|
1.000
|
127-539
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
58831.740
|
8.033
|
10.000
|
20.594
|
9.091
|
48.609
|
51.391
|
11.688
|
8.905
|
56.401
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
4327.737
|
9.117
|
1274.834
|
588.958
|
69.187
|
9.427
|
25.369
|
37.735
|
21634.737
|
1952.311
|
10387.636
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.895
|
5.872
|
-1.006
|
-3.122
|
-2.861
|
1.439
|
1.923
|
— |
3.373
|
-5.030
|
-4.360
|
— | — |