Hg_chrom4_TN10mRNA_7191
Organism: Heterodera glycines Gene Locus: chr4:783437-786326 Feature type: polypeptideProtein Sequence
Length: 250
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 1.953 | 1.236 | 1.517 | 0.4 | 1.026 | 0.667 | 0.2 | 1.422 | 1.027 | 0.909 | 1.647 | 1.222 | 0.923 | 0.49 | 0.8 | 1.18 | 1.273 | 0.923 | 1.176 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6807
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_22613
|
— |
29-J3_J4_Female_Male
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRVK
|
— | — | — | — |
1-34
|
— |
0.635
|
— |
0.000
|
0.229
|
0.238
|
0.055
|
0.437
|
0.128
|
0.260
|
0.327
|
0.007
|
0.197
|
0.898
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008297
|
1.000
|
1.000
|
Hsc_gene_22613.t1
|
Hsc_gene_22613.t1
|
— |
Q9FSG7.1 Thaumatin-like protein 1a [Malus domestica]
|
XP_043477579.1 pathogenesis-related protein 5-like [Leptopilina heterotoma]
|
KAJ0089334
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.871|GO:0050896_0.695|GO:0005575_0.518|GO:0110165_0.511
|
IPR001938+6-250_44-248_48-248_85-247+|IPR037176+42-247_43-247+
|
SM00205+44-248+
|
PF00314+48-248+Thaumatin_family
|
— |
PTHR31013+32-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
27610.690
|
5.281
|
-1.500
|
18.000
|
10.000
|
43.200
|
56.800
|
8.800
|
9.200
|
58.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
464.750
|
20.266
|
9.498
|
140.299
|
388.668
|
764.126
|
201.203
|
74.971
|
287.536
|
1217.991
|
819.225
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.331
|
2.657
|
4.008
|
1.439
|
0.990
|
-1.915
|
-3.464
|
1.570
|
— | — | — | — | — |