Hg_chrom4_TN10mRNA_7202
Organism: Heterodera glycines Gene Locus: chr4:842498-845610 Feature type: polypeptideProtein Sequence
Length: 339
(Signal peptide: 1-14)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.235 | 0.375 | 1.221 | 1.524 | 1.059 | 0.737 | 2.802 | 0.983 | 1.076 | 1.207 | 1.041 | 1.475 | 0.737 | 1.445 | 0.674 | 0.967 | 1.073 | 1.588 | 0.087 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6816
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRRVCHGIQHAKFLKDRLK
|
— | — | — | — |
1-14
|
0.958
|
0.999
|
0.000
|
0.000
|
0.144
|
0.397
|
0.151
|
0.278
|
0.069
|
0.073
|
0.135
|
0.051
|
0.264
|
0.973
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002039
|
2.000
|
2.000
|
Hsc_gene_23706.t1;Hsc_gene_23706.t2
|
— | — |
Q29461.1 Chymotrypsin-like elastase family member 2A [Bos taurus]
|
KAI1701500.1 trypsin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.817|GO:0110165_0.815|GO:0008150_0.729|GO:0005622_0.525|GO:0016020_0.522
|
IPR001254+78-333_82-328_87-132_250-328+|IPR001314+113-128_203-217_280-292+|IPR009003+66-333+|IPR018114+123-128+|IPR043504+73-217_230-336+|IPR051487+60-334+
|
SM00020+82-328+
|
PF00089+87-132_250-328+Trypsin
|
— |
PTHR24256+60-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-339
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
38987.800
|
9.429
|
22.500
|
31.858
|
13.274
|
51.917
|
48.083
|
20.649
|
11.209
|
44.248
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
3.620
|
2.547
|
1.659
|
1.228
|
3.968
|
4.012
|
3.441
|
2.178
|
3.792
|
5.856
|
4.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |