Hg_chrom4_TN10mRNA_7203
Organism: Heterodera glycines Gene Locus: chr4:848070-853323 Feature type: polypeptideProtein Sequence
Length: 760
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 0.796 | 0.694 | 0.181 | 1.228 | 0.843 | 0.721 | 0.855 | 1.199 | 1.405 | 1.116 | 2.477 | 1.316 | 1.29 | 1.45 | 1.184 | 0.69 | 0.738 | 0.607 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6817
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PKEKRSK,GKNHRRRIK,RKQREEWLTTGRMGRR,RKLQNSHLLEKDERGPKR,RRVEDEFEQLLKTRKQRE,KRTESARLIRYGKKDRRRV,RRVPRRVEDEFEQLLKTRK
|
— | — | — | — | — | — |
0.062
|
— | — |
0.352
|
0.238
|
0.097
|
0.032
|
0.169
|
0.038
|
0.137
|
0.241
|
0.213
|
0.963
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003762
|
2.000
|
1.000
|
Hsc_gene_8161.t1
|
— | — | — |
KAI1711462.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
-0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006954+357-569+
|
— |
PF04870+357-569+Moulting_cycle
|
— |
PTHR21523+151-760+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-302
|
2.000
|
1-138;303-760
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
85732.420
|
10.136
|
31.500
|
27.368
|
9.737
|
46.579
|
53.421
|
16.184
|
11.184
|
45.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
728.565
|
40.785
|
185.016
|
58.170
|
2090.479
|
4352.881
|
121.156
|
230.720
|
18.305
|
519.040
|
304.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.955
|
— |
-1.562
|
5.134
|
1.075
|
-5.158
|
-4.351
|
-0.784
|
-4.952
|
— | — | — | — |
No JSON data available for plots.