Hg_chrom4_TN10mRNA_7210
Organism: Heterodera glycines Gene Locus: chr4:897720-900391 Feature type: polypeptideProtein Sequence
Length: 350
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.196 | 0.416 | 1.084 | 1.619 | 0.952 | 0.85 | 2.571 | 1.397 | 0.927 | 1.169 | 0.84 | 1.429 | 0.879 | 1.283 | 0.694 | 1.124 | 0.952 | 1.319 | 0.084 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6824
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-21
|
0.963
|
1.000
|
0.000
|
0.000
|
0.196
|
0.379
|
0.117
|
0.255
|
0.066
|
0.090
|
0.101
|
0.018
|
0.296
|
0.939
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002039
|
2.000
|
2.000
|
Hsc_gene_23706.t1;Hsc_gene_23706.t2
|
Hsc_gene_21105.t1
|
— |
Q6UWB4.2 Serine protease 55 [Homo sapiens]
|
KAI1704039.1 trypsin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.745|GO:0110165_0.703|GO:0008150_0.666|GO:0003674_0.543
|
IPR001254+77-339_78-344_84-341_86-133_171-339+|IPR001314+113-128_203-217_291-303+|IPR009003+61-344+|IPR018114+123-128+|IPR043504+73-344+|IPR051487+60-345+
|
SM00020+77-339+
|
PF00089+86-133_171-339+Trypsin
|
— |
PTHR24256+60-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
39757.470
|
8.584
|
16.000
|
31.143
|
12.286
|
51.714
|
48.286
|
19.143
|
12.000
|
45.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
cyan
|
5.774
|
7.954
|
2.186
|
2.619
|
2.683
|
34.119
|
10.974
|
1.386
|
0.514
|
1.656
|
1.167
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.096
|
-1.739
|
— | — |
3.696
|
-1.615
|
-4.737
|
3.146
|
— | — | — | — | — |