Hg_chrom4_TN10mRNA_7219
Organism: Heterodera glycines Gene Locus: chr4:945818-950074 Feature type: polypeptideProtein Sequence
Length: 346
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 1.344 | 0.946 | 0.299 | 2.601 | 1.112 | 0.447 | 0.723 | 1.285 | 0.859 | 1.533 | 1.7 | 0.723 | 0.889 | 1.003 | 0.619 | 0.853 | 0.613 | 1.334 | 0.425 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6833
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
8H07|AF500024.1#tn7jg11364.t1
|
10A06|AF5023911#tn8jg3150t1
|
— | — |
Hg_chrom4_TN10mRNA_7219
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RERKEEQKRKEK
|
— | — | — | — |
1-16
|
0.973
|
1.000
|
0.000
|
0.000
|
0.730
|
0.144
|
0.019
|
0.667
|
0.065
|
0.066
|
0.081
|
0.002
|
0.113
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008307
|
1.000
|
1.000
|
Hsc_gene_21111.t1
|
— | — |
G5ECU1.1 Skp1-related protein [Caenorhabditis elegans]
|
QLK97569.1 secretory protein 8H07 [Heterodera glycines]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.859|GO:0009987_0.709|GO:0005575_0.694|GO:0110165_0.694|GO:0005622_0.618|GO:0065007_0.610|GO:0050789_0.597|GO:0050794_0.538|GO:0043226_0.527|GO:0016020_0.509|GO:0008152_0.503
|
IPR001232+97-243+|IPR011333+93-297_99-167+|IPR016072+259-293+|IPR016073+100-166+|IPR016897+100-302+|IPR036296+222-293+
|
SM00512+97-243+
|
PF01466+259-293+Skp1_family,_dimerisation_domain|PF03931+100-166+Skp1_family,_tetramerisation_domain
|
— |
PTHR11165+100-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
174-224;260-346
|
2.000
|
1-173;225-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
39737.560
|
4.635
|
-17.500
|
37.283
|
7.225
|
56.936
|
43.064
|
16.474
|
20.809
|
42.775
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
7997.106
|
9.840
|
355.960
|
887.532
|
262.955
|
41.896
|
48.346
|
141.938
|
37359.830
|
6311.791
|
19618.093
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.944
|
6.354
|
1.428
|
-1.786
|
-2.635
|
— |
1.656
|
-1.412
|
2.468
|
-5.254
|
-4.462
|
— | — |