Hg_chrom4_TN10mRNA_7222
Organism: Heterodera glycines Gene Locus: chr4:958952-961580 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 0.834 | 1.231 | 0.137 | 2.988 | 2.043 | 0.569 | 1.195 | 1.062 | 0.538 | 1.388 | 1.172 | 0.553 | 1.073 | 1.22 | 0.398 | 0.457 | 0.966 | 1.532 | 0.82 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6836
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
28B03|AF5000251#tn22jg11467t1
|
Hsc_gene_21120
|
— |
Hg_chrom4_TN10mRNA_7222
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
ERERKEEQKRKEKEAE,RKEEQKRKEKEAERLRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.836
|
0.402
|
0.019
|
0.531
|
0.109
|
0.036
|
0.103
|
0.005
|
0.070
|
0.398
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003763
|
3.000
|
0.000
|
0.000
|
Hsc_gene_21119.t1;Hsc_gene_21126.t1;Hsc_gene_21128.t1;Hsc_gene_21130.t1;Hsc_gene_25782.t1
|
— |
D4ARL8.1 E3 ubiquitin ligase complex SCF subunit sconC [Trichophyton benhamiae CBS 112371]
|
AAP30764.1 putative gland protein G28B03 [Heterodera glycines]
|
ORX88891
|
0.550
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.861|GO:0009987_0.746|GO:0005575_0.723|GO:0110165_0.722|GO:0065007_0.693|GO:0050789_0.677|GO:0005622_0.633|GO:0050794_0.574|GO:0043226_0.570|GO:0043229_0.539|GO:0005737_0.531|GO:0032991_0.506|GO:0016020_0.504
|
IPR011333+1-171+|IPR016072+134-168+|IPR036296+92-168+
|
— |
PF01466+134-168+Skp1_family,_dimerisation_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;138-251
|
1.000
|
14-137
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
29559.560
|
4.440
|
-21.000
|
42.231
|
9.163
|
59.363
|
40.637
|
17.530
|
24.701
|
39.044
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
28584.685
|
179.113
|
2608.176
|
1607.689
|
415.812
|
62.254
|
35.695
|
238.471
|
133838.565
|
22748.871
|
70358.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.636
|
3.029
|
-0.590
|
-1.984
|
-2.725
|
-0.792
|
1.846
|
-2.604
|
2.803
|
-6.218
|
-5.642
|
— | — |
No JSON data available for plots.