Hg_chrom4_TN10mRNA_7223
Organism: Heterodera glycines Gene Locus: chr4:963322-966774 Feature type: polypeptideProtein Sequence
Length: 285
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 1.387 | 0.893 | 0.847 | 1.228 | 0.63 | 0.835 | 0.877 | 1.248 | 0.853 | 1.701 | 1.445 | 1.072 | 1.552 | 1.146 | 1.153 | 0.863 | 0.425 | 0.27 | 0.413 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6837
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
10A06|AF502391.1#tn8jg3150.t1
|
10A06|AF5023911#tn8jg3150t1
|
— | — |
Hg_chrom4_TN10mRNA_7223
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRKL,KTEEG,SPKGK
|
— | — | — | — |
1-16
|
0.961
|
1.000
|
0.000
|
0.000
|
0.596
|
0.121
|
0.026
|
0.595
|
0.107
|
0.079
|
0.057
|
0.004
|
0.145
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000848
|
1.000
|
5.000
|
Hsc_gene_17773.t1;Hsc_gene_21121.t1;Hsc_gene_21121.t2;Hsc_gene_21122.t1;Hsc_gene_21122.t2
|
— | — | — |
ACU12489.1 10A06 effector protein isoform 1 [Heterodera schachtii]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0005575_0.774|GO:0110165_0.774|GO:0003674_0.769|GO:0005622_0.628|GO:0009987_0.623|GO:0016020_0.620|GO:0008152_0.616|GO:0043170_0.616|GO:0044238_0.610|GO:0003824_0.605|GO:0140096_0.596|GO:0016740_0.591|GO:0016746_0.579|GO:0016755_0.576|GO:0019787_0.576|GO:0004842_0.575|GO:0019538_0.554|GO:0043226_0.543|GO:0065007_0.541|GO:0043229_0.534|GO:0050789_0.521|GO:0043412_0.515|GO:0036211_0.513|GO:0043227_0.506|GO:0043231_0.506|GO:0050794_0.504|GO:0016567_0.502|GO:0032446_0.502|GO:0043687_0.502|GO:0070647_0.502
|
IPR001841+169-210_170-209_170-210+|IPR013083+148-217+|IPR045899+117-221+
|
SM00184+170-209+
|
PF13639+169-210+Ring_finger_domain
|
— |
PTHR46719+117-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-166;262-285
|
1.000
|
167-261
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.923
|
31517.970
|
9.911
|
15.500
|
30.877
|
7.368
|
52.632
|
47.368
|
18.596
|
12.281
|
51.579
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1163.948
|
1.221
|
139.804
|
891.603
|
233.344
|
26.364
|
21.077
|
63.416
|
1601.638
|
3374.732
|
2614.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.606
|
9.371
|
2.782
|
-1.964
|
-3.132
|
— |
1.160
|
-1.447
|
— | — |
-3.717
|
— | — |