Hg_chrom4_TN10mRNA_7224
Organism: Heterodera glycines Gene Locus: chr4:969956-975264 Feature type: polypeptideProtein Sequence
Length: 452
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.286 | 1.167 | 0.229 | 2.397 | 1.248 | 0.5 | 1.659 | 1.278 | 0.807 | 1.81 | 1.301 | 0.676 | 0.893 | 0.948 | 0.632 | 0.29 | 1.14 | 1.191 | 0.586 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6838
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
28B03|AF500025.1#tn22jg11467.t1
|
28B03|AF5000251#tn22jg11467t1
|
— | — |
Hg_chrom4_TN10mRNA_7224
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKNLEVDLRVIRHSKK,RKSAGIRIEEPNDVKGKGK
|
— | — | — | — |
1-19
|
0.958
|
1.000
|
0.000
|
0.000
|
0.874
|
0.180
|
0.036
|
0.520
|
0.120
|
0.040
|
0.073
|
0.002
|
0.177
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003763
|
3.000
|
0.000
|
0.000
|
Hsc_gene_21119.t1;Hsc_gene_21126.t1;Hsc_gene_21128.t1;Hsc_gene_21130.t1;Hsc_gene_25782.t1
|
— |
D4ARL8.1 E3 ubiquitin ligase complex SCF subunit sconC [Trichophyton benhamiae CBS 112371]
|
AAP30764.1 putative gland protein G28B03 [Heterodera glycines]
|
QDS70059
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.857|GO:0005575_0.725|GO:0110165_0.721|GO:0009987_0.685|GO:0005622_0.650|GO:0065007_0.583|GO:0050789_0.569|GO:0043226_0.564|GO:0008152_0.552|GO:0016020_0.542|GO:0043229_0.540|GO:0043170_0.510|GO:0032991_0.509|GO:0005737_0.508
|
IPR011333+108-183_184-370+|IPR016072+333-367+|IPR016897+188-371+|IPR036296+291-367+
|
— |
PF01466+333-367+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+188-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-171;338-452
|
1.000
|
172-337
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
52580.230
|
5.307
|
-11.500
|
40.708
|
9.292
|
57.301
|
42.699
|
19.912
|
20.796
|
40.929
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
30841.063
|
881.807
|
28461.138
|
11022.983
|
2625.500
|
290.948
|
181.461
|
1562.340
|
143724.623
|
10251.366
|
67454.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.784
|
3.506
|
-1.261
|
-2.102
|
-3.159
|
-0.670
|
2.336
|
-2.970
|
3.698
|
-3.518
|
— | — | — |