Hg_chrom4_TN10mRNA_7225
Organism: Heterodera glycines Gene Locus: chr4:969956-975276 Feature type: polypeptideProtein Sequence
Length: 465
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.25 | 1.134 | 0.222 | 2.437 | 1.268 | 0.538 | 1.613 | 1.243 | 0.785 | 1.792 | 1.265 | 0.657 | 0.868 | 0.922 | 0.676 | 0.282 | 1.173 | 1.158 | 0.569 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6838
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
28B03|AF500025.1#tn22jg11467.t1
|
28B03|AF5000251#tn22jg11467t1
|
— | — |
Hg_chrom4_TN10mRNA_7225
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKNLEVDLRVIRHSKK,RKSAGIRIEEPNDVKGKGK
|
— | — | — | — |
1-19
|
0.958
|
1.000
|
0.000
|
0.000
|
0.878
|
0.164
|
0.043
|
0.504
|
0.120
|
0.037
|
0.059
|
0.002
|
0.168
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003763
|
3.000
|
0.000
|
0.000
|
Hsc_gene_21119.t1;Hsc_gene_21126.t1;Hsc_gene_21128.t1;Hsc_gene_21130.t1;Hsc_gene_25782.t1
|
— |
D4ARL8.1 E3 ubiquitin ligase complex SCF subunit sconC [Trichophyton benhamiae CBS 112371]
|
AAP30764.1 putative gland protein G28B03 [Heterodera glycines]
|
ORX88891
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.848|GO:0005575_0.731|GO:0110165_0.727|GO:0009987_0.656|GO:0005622_0.650|GO:0043226_0.598|GO:0043229_0.573|GO:0016020_0.568|GO:0065007_0.551|GO:0005737_0.543|GO:0050789_0.534|GO:0008152_0.518|GO:0032991_0.508
|
IPR011333+108-184_185-383+|IPR016072+346-380+|IPR016897+188-384+|IPR036296+304-380+
|
— |
PF01466+346-380+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+188-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-171;350-465
|
1.000
|
172-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
53852.560
|
5.180
|
-13.500
|
40.430
|
9.032
|
57.204
|
42.796
|
19.570
|
20.860
|
41.505
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
30841.063
|
881.807
|
28461.138
|
11022.983
|
2625.500
|
290.948
|
181.461
|
1562.340
|
143724.623
|
10251.366
|
67454.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.784
|
3.506
|
-1.261
|
-2.102
|
-3.159
|
-0.670
|
2.336
|
-2.970
|
3.698
|
-3.518
|
— | — | — |