Hg_chrom4_TN10mRNA_7228
Organism: Heterodera glycines Gene Locus: chr4:990797-994779 Feature type: polypeptideProtein Sequence
Length: 439
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 1.536 | 1.201 | 0.55 | 0.873 | 0.701 | 0.732 | 1.708 | 1.417 | 1.077 | 0.863 | 1.072 | 1.329 | 0.789 | 0.79 | 1.237 | 0.71 | 0.69 | 1.402 | 1.474 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6840
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom4_TN10mRNA_7228
|
22-Not_Clustered
|
0.678
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.993
|
1.000
|
0.000
|
0.000
|
0.278
|
0.276
|
0.048
|
0.421
|
0.190
|
0.160
|
0.223
|
0.003
|
0.147
|
0.570
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002042
|
2.000
|
2.000
|
Hsc_gene_24519.t1;Hsc_gene_4168.t1
|
Hsc_gene_24519.t1;Hsc_gene_4168.t1
|
— |
P04069.1 Carboxypeptidase B [Astacus astacus]
|
KAI1722820.1 zinc carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.695|GO:0005575_0.629|GO:0110165_0.629|GO:0008150_0.624|GO:0003824_0.578|GO:0016787_0.528|GO:0140096_0.504
|
IPR000834+132-423_138-423_158-170_183-197_183-205_271-279_325-338+|IPR003146+29-101+|IPR036990+20-114+
|
SM00631+132-423+
|
PF00246+138-423+Zinc_carboxypeptidase|PF02244+29-101+Carboxypeptidase_activation_peptide
|
G3DSA:3.40.630.10:FF:000084+123-438+Carboxypeptidase_B2
|
PTHR11705+8-435+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-439
|
1cpb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
49361.430
|
6.227
|
-2.500
|
24.829
|
15.034
|
47.153
|
52.847
|
12.984
|
11.845
|
51.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
57.514
|
0.447
|
1.765
|
1.363
|
14.298
|
39.220
|
6.275
|
16.258
|
2.056
|
220.220
|
126.721
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
3.353
|
1.473
|
-2.639
|
-1.386
|
-1.232
|
— | — | — | — | — |