SCN Proteipedia

Hg_chrom4_TN10mRNA_7232

Organism: Heterodera glycines Gene Locus: chr4:1042818-1045298 Feature type: polypeptide

Protein Sequence

Length: 309

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.054	0.903	0.883	1.116	0.863	1.494	0.616	0.647	1.366	1.093	0.834	0.952	0.809	0.622	0.727	0.832	2.016	1.177	1.245	0.857	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6844	—	—	1.111	1.000	1.000	1.000	2.000	2.000	1.000	—	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.950

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRKR	—	—	—	—	—	—	0.000	—	—	0.095	0.060	0.021	0.270	0.114	0.425	0.206	0.045	0.887	0.521

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003765	2.000	1.000	Hsc_gene_10638.t1	Hsc_gene_15157.t1;Hsc_gene_15157.t2;Hsc_gene_15157.t3;Hsc_gene_15157.t4;Hsc_gene_15157.t5	—	—	KAI3413775.1 hypothetical protein GPALN_011256 [Globodera pallida]	No	-0.110

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0005634\|GO:0005737\|GO:0006397	GO:0008150_0.950\|GO:0005575_0.925\|GO:0110165_0.919\|GO:0071944_0.899\|GO:0009987_0.898\|GO:0005886_0.870\|GO:0016020_0.870\|GO:0071840_0.741\|GO:0016043_0.736\|GO:0005622_0.732\|GO:0008152_0.732\|GO:0005737_0.721\|GO:0044238_0.720\|GO:0044237_0.717\|GO:0009058_0.713\|GO:0043226_0.707\|GO:0043170_0.706\|GO:0044249_0.703\|GO:0009059_0.691\|GO:0010467_0.687\|GO:0006139_0.684\|GO:0034654_0.681\|GO:0043933_0.679\|GO:0043229_0.678\|GO:0090304_0.677\|GO:0016070_0.676\|GO:0032774_0.676\|GO:0141187_0.676\|GO:0043227_0.671\|GO:0006396_0.670\|GO:0008380_0.670\|GO:0043231_0.654\|GO:0098590_0.629\|GO:0042995_0.601\|GO:0120025_0.596\|GO:0043005_0.585\|GO:0005634_0.555\|GO:0031974_0.554\|GO:0043233_0.554\|GO:0070013_0.554\|GO:0031981_0.550\|GO:0005654_0.546\|GO:0015030_0.540\|GO:0016604_0.540\|GO:0003674_0.535	IPR002999+237-296_238-298+\|IPR010304+238-288+\|IPR051694+130-231+	SM00333+237-296+	PF06003+238-288+Survival_motor_neuron_protein_(SMN),_Tudor_domain	—	PTHR15549+130-231+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-309	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.517	33984.770	6.114	-1.000	20.388	8.738	48.220	51.780	10.356	10.032	55.340

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	35.492	13.104	14.216	25.956	24.612	13.427	4.446	6.095	50.701	79.054	66.903

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.849	0.979	—	-0.857	-1.589	-1.238	—	—	—	—	—	—

No JSON data available for plots.

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