Hg_chrom4_TN10mRNA_7233
Organism: Heterodera glycines Gene Locus: chr4:1045550-1045835 Feature type: polypeptideProtein Sequence
Length: 77
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.359 | 1.812 | 0.945 | 0.448 | 0.649 | 1.332 | 0.618 | 0.649 | 1.154 | 0.878 | 0.787 | 1.528 | 0.722 | 0.749 | 0.265 | 1.113 | 1.065 | 1.968 | 1.998 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6845
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.280
|
0.397
|
0.070
|
0.639
|
0.124
|
0.320
|
0.189
|
0.099
|
0.190
|
0.331
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000543
|
2.000
|
5.000
|
Hsc_gene_15157.t1;Hsc_gene_15157.t2;Hsc_gene_15157.t3;Hsc_gene_15157.t4;Hsc_gene_15157.t5
|
Hsc_gene_15157.t1;Hsc_gene_15157.t2;Hsc_gene_15157.t3;Hsc_gene_15157.t4;Hsc_gene_15157.t5
|
— | — |
KAH7718741.1 E3 ubiquitin-protein ligase UBR5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.916|GO:0003674_0.774|GO:0008152_0.714|GO:0043170_0.711|GO:0044238_0.703|GO:0019538_0.695|GO:0003824_0.660|GO:0140096_0.654|GO:0004842_0.650|GO:0016740_0.650|GO:0016746_0.650|GO:0016755_0.650|GO:0019787_0.650|GO:0061630_0.650|GO:0061659_0.650|GO:0009987_0.601|GO:0065007_0.601|GO:0050789_0.586|GO:0050896_0.574|GO:0050794_0.558|GO:0005488_0.548|GO:0005575_0.539|GO:0005515_0.534|GO:0110165_0.524|GO:0051716_0.515
|
IPR009091+1-77_8-76+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-77
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
8261.390
|
4.792
|
-1.500
|
16.883
|
7.792
|
44.156
|
55.844
|
7.792
|
9.091
|
62.338
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
3.157
|
0.996
|
2.943
|
3.268
|
2.973
|
3.409
|
0.000
|
0.268
|
0.691
|
8.096
|
4.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-5.920
|
-3.749
|
— | — | — | — | — | — |
No JSON data available for plots.