Hg_chrom4_TN10mRNA_7235
Organism: Heterodera glycines Gene Locus: chr4:1072544-1079247 Feature type: polypeptideProtein Sequence
Length: 628
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.907 | 0.926 | 1.303 | 0.604 | 1.247 | 1.062 | 0.739 | 1.354 | 0.849 | 1.291 | 1.013 | 1.686 | 1.371 | 0.735 | 1.365 | 1.069 | 0.835 | 0.7 | 0.49 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6847
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRRKLEKQDEDIRKRIQ,KRNDAGGAAGQRSRKLPK,KKARSQCQLSAFEAYREKK,KRQRTTTTTTIDNRRGKNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.809
|
0.082
|
0.007
|
0.153
|
0.033
|
0.028
|
0.048
|
0.002
|
0.039
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008309
|
1.000
|
1.000
|
Hsc_gene_14903.t1
|
Hsc_gene_14904.t1
|
— |
Q6NVM6.1 Nucleolar protein 10 [Xenopus tropicalis]
|
KHN87705.1 Nucleolar protein 10 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005634
|
GO:0005575_0.907|GO:0110165_0.898|GO:0005622_0.844|GO:0016020_0.804|GO:0043226_0.782|GO:0043229_0.755|GO:0043227_0.727|GO:0043231_0.708|GO:0005634_0.661|GO:0003674_0.501
|
IPR001680+42-81_165-204_172-213_178-204_221-262+|IPR012580+571-597+|IPR015943+56-342+|IPR036322+5-347+|IPR040382+2-616+
|
SM00320+42-81_165-204_221-262+
|
PF00400+178-204+WD_domain,_G-beta_repeat|PF08159+571-597+NUC153_domain
|
— |
PTHR14927+2-616+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
436-628
|
1.000
|
1-435
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
70885.110
|
6.554
|
0.500
|
30.732
|
10.828
|
51.433
|
48.567
|
16.083
|
14.650
|
47.930
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
3084.361
|
2191.214
|
2014.304
|
1572.113
|
1687.156
|
1313.788
|
2280.279
|
1380.101
|
5207.652
|
4923.733
|
5045.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.350
|
-0.616
|
-0.249
|
— |
-0.346
|
0.806
|
— |
0.868
|
— |
-1.564
|
— | — | — |
No JSON data available for plots.