SCN Proteipedia

Hg_chrom4_TN10mRNA_7237

Organism: Heterodera glycines Gene Locus: chr4:1080973-1089092 Feature type: polypeptide

Protein Sequence

Length: 643

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.705	1.194	1.216	0.804	1.192	0.758	0.852	1.477	1.14	1.03	1.084	1.281	1.426	0.897	1.333	0.8	0.535	1.013	1.555	1.052	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6848	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	golgi_apparatus	—	—	1-21	1.000	—	—	—	—	0.000	—	—	0.094	0.068	0.002	0.153	0.443	0.359	0.954	0.028	0.109	0.304

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001258	2.000	3.000	Hsc_gene_14905.t1;Hsc_gene_14905.t2;Hsc_gene_14905.t3	Hsc_gene_14905.t2	—	Q95ZJ1.2 Polypeptide N-acetylgalactosaminyltransferase 5 [Caenorhabditis elegans]	KAI6176609.1 Polypeptide N-acetylgalactosaminyltransferase [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.868\|GO:0003674_0.830\|GO:0009987_0.771\|GO:0008152_0.734\|GO:0003824_0.728\|GO:0044238_0.714\|GO:0009058_0.693\|GO:0044237_0.671\|GO:0043170_0.655\|GO:0016740_0.641\|GO:0044249_0.638\|GO:0019538_0.636\|GO:0009059_0.632\|GO:0140096_0.626\|GO:0016757_0.600\|GO:0016758_0.600\|GO:1901135_0.600\|GO:0005575_0.596\|GO:0043412_0.596\|GO:0110165_0.596\|GO:0008194_0.592\|GO:0004653_0.588\|GO:0008376_0.588\|GO:0036211_0.588\|GO:1901137_0.577\|GO:0009100_0.573\|GO:0070085_0.572\|GO:0009101_0.571\|GO:0043413_0.571\|GO:0006486_0.570\|GO:0006493_0.565	IPR000772+497-618_502-615_510-617+\|IPR001173+183-366+\|IPR029044+101-486_159-482+\|IPR035992+505-619+\|IPR045885+183-480+	SM00458+497-618+	PF00535+183-366+Glycosyl_transferase_family_2\|PF00652+502-615+Ricin-type_beta-trefoil_lectin_domain	G3DSA:3.90.550.10:FF:000053+109-488+Polypeptide_N-acetylgalactosaminyltransferase	PTHR11675+11-615+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-643	1xhb_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.697	73691.790	7.341	8.500	30.482	13.686	47.434	52.566	16.641	13.841	47.589

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	violet	1204.792	1684.957	670.169	783.957	865.701	2370.455	1271.521	1400.556	597.975	1429.738	1073.268

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.558	-1.241	0.334	0.111	1.468	-0.889	-0.864	—	—	—	—	—	—

No JSON data available for plots.

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