Hg_chrom4_TN10mRNA_7241
Organism: Heterodera glycines Gene Locus: chr4:1112079-1114664 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 1.262 | 0.846 | 0.401 | 1.227 | 1.093 | 0.692 | 1.744 | 1.12 | 1.833 | 0.529 | 1.14 | 1.615 | 0.447 | 1.266 | 0.997 | 0.699 | 1.057 | 0.894 | 0.342 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6852
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.896
|
0.240
|
0.026
|
0.398
|
0.106
|
0.155
|
0.065
|
0.158
|
0.053
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003766
|
2.000
|
1.000
|
Hsc_gene_14910.t1
|
Hsc_gene_14910.t1
|
— | — |
KAF7629209.1 Rad51 domain-containing protein [Meloidogyne graminicola]
|
HRT05223
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0005524|GO:0006281|GO:0140664
|
GO:0008150_0.829|GO:0009987_0.765|GO:0005575_0.712|GO:0008152_0.685|GO:0050896_0.668|GO:0044238_0.661|GO:0051716_0.644|GO:0043170_0.635|GO:0006950_0.621|GO:0006139_0.610|GO:0003674_0.598|GO:0090304_0.598|GO:0033554_0.596|GO:0006259_0.580|GO:0006974_0.577|GO:0006281_0.572|GO:0110165_0.547|GO:0071840_0.514|GO:0005488_0.509|GO:0016043_0.508
|
IPR013632+30-252+|IPR020588+25-190+|IPR027417+27-257_30-253+|IPR051988+13-243+
|
— |
PF08423+30-252+Rad51
|
— |
PTHR46457+13-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
28936.090
|
6.227
|
-1.500
|
25.194
|
11.628
|
46.124
|
53.876
|
13.178
|
12.016
|
46.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
215.244
|
147.430
|
105.826
|
112.687
|
121.813
|
114.195
|
303.669
|
147.409
|
5.848
|
542.422
|
312.462
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.710
|
-0.524
|
— | — | — |
1.421
|
— |
1.184
|
-6.645
|
4.475
|
— | — | — |
No JSON data available for plots.