Hg_chrom4_TN10mRNA_7248
Organism: Heterodera glycines Gene Locus: chr4:1466483-1472243 Feature type: polypeptideProtein Sequence
Length: 587
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.574 | 0.792 | 1.394 | 0.764 | 0.965 | 1.791 | 0.385 | 0.852 | 1.06 | 1.865 | 0.671 | 1.503 | 1.372 | 1.114 | 0.8 | 1.193 | 1.229 | 0.8 | 0.262 | 0.701 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6859
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.893
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.119
|
0.075
|
0.457
|
0.211
|
0.095
|
0.095
|
0.102
|
0.238
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002047
|
3.000
|
1.000
|
Hsc_gene_21355.t1
|
Hsc_gene_21356.t1
|
— |
Q5XIK8.1 CTD small phosphatase-like protein 2 [Rattus norvegicus]
|
KAI3413353.1 CTD small phosphatase-like protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0008150_0.899|GO:0005575_0.848|GO:0110165_0.848|GO:0009987_0.786|GO:0016020_0.761|GO:0065007_0.747|GO:0005622_0.720|GO:0050789_0.704|GO:0043226_0.663|GO:0050794_0.630|GO:0043229_0.619|GO:0043227_0.604|GO:0043231_0.579|GO:0003674_0.523
|
IPR004274+79-238_82-226_85-240+|IPR011948+85-241+|IPR023214+65-243+|IPR036412+72-240+|IPR050365+44-240+
|
SM00577+82-226+
|
PF03031+85-240+NLI_interacting_factor-like_phosphatase
|
G3DSA:3.40.50.1000:FF:000015+72-254+CTD_small_phosphatase-like_protein_2
|
PTHR12210+44-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-36;288-412
|
2.000
|
37-287;413-587
|
2hhl_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
66222.500
|
4.462
|
-25.000
|
23.509
|
9.370
|
49.744
|
50.256
|
10.051
|
13.458
|
48.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
124.828
|
202.439
|
123.372
|
87.833
|
70.741
|
107.627
|
214.620
|
165.129
|
40.846
|
151.078
|
103.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.944
|
-1.341
|
-0.381
|
-0.344
|
0.620
|
1.004
|
0.511
|
0.519
|
— | — | — | — | — |
No JSON data available for plots.