Hg_chrom4_TN10mRNA_7249
Organism: Heterodera glycines Gene Locus: chr4:1486834-1489595 Feature type: polypeptideProtein Sequence
Length: 645
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 0.865 | 0.789 | 0.855 | 1.628 | 1.034 | 0.794 | 1.395 | 0.896 | 1.299 | 0.587 | 1.459 | 2.11 | 0.954 | 1.55 | 1.262 | 0.686 | 0.587 | 1.193 | 0.091 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6860
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKGEEQRQKHKKKAN,KKIATDGQMKMRRRKRKLG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.182
|
0.083
|
0.019
|
0.176
|
0.241
|
0.094
|
0.232
|
0.051
|
0.548
|
0.383
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008314
|
1.000
|
1.000
|
Hsc_gene_874.t1
|
Hsc_gene_874.t1
|
— | — |
XP_059371581.1 glypican-6-like [Carassius carassius]
|
No
|
-0.430
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0009966|GO:0062023
|
GO:0005575_0.875|GO:0110165_0.874|GO:0016020_0.808|GO:0071944_0.781|GO:0005886_0.780|GO:0005622_0.763|GO:0043226_0.736|GO:0043229_0.715|GO:0043227_0.694|GO:0005737_0.686|GO:0008150_0.673|GO:0043231_0.661|GO:0009987_0.626|GO:0005773_0.605|GO:0012505_0.584|GO:0031974_0.516|GO:0043233_0.514|GO:0070013_0.514
|
IPR001863+18-587_34-400+
|
— |
PF01153+34-400+Glypican
|
— |
PTHR10822+18-587+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
375-645
|
1.000
|
1-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
72951.490
|
5.751
|
-8.000
|
28.372
|
12.248
|
49.147
|
50.853
|
14.264
|
14.109
|
46.357
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2425.425
|
2900.135
|
3294.935
|
1713.533
|
1194.403
|
1298.999
|
1616.255
|
1527.594
|
5985.372
|
1042.510
|
3160.879
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.896
|
-0.834
|
-0.553
|
— |
0.327
|
— |
0.225
|
2.405
|
-1.649
|
— | — | — |
No JSON data available for plots.