Hg_chrom4_TN10mRNA_7251
Organism: Heterodera glycines Gene Locus: chr4:1491188-1493767 Feature type: polypeptideProtein Sequence
Length: 502
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.39 | 1.195 | 0.756 | 1.56 | 1.226 | 0.688 | 1.693 | 1.239 | 1.131 | 0.423 | 1.055 | 0.941 | 0.69 | 1.423 | 1.224 | 0.751 | 1.117 | 0.613 | 0.762 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6862
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.822
|
0.127
|
0.002
|
0.437
|
0.059
|
0.037
|
0.068
|
0.041
|
0.036
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008316
|
1.000
|
1.000
|
Hsc_gene_872.t2
|
Hsc_gene_872.t1;Hsc_gene_872.t2
|
— |
Q9V8P9.1 E3 ubiquitin-protein ligase Topors [Drosophila melanogaster]
|
KAF7638827.1 RING-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.810
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.864|GO:0009987_0.820|GO:0005575_0.785|GO:0110165_0.772|GO:0008152_0.704|GO:0016020_0.694|GO:0044238_0.691|GO:0043170_0.686|GO:0003674_0.675|GO:0005622_0.668|GO:0043226_0.606|GO:0043229_0.594|GO:0065007_0.585|GO:0050789_0.572|GO:0043227_0.564|GO:0050794_0.559|GO:0043231_0.553
|
IPR001841+3-41_3-42+|IPR013083+1-100+|IPR017907+19-28+
|
SM00184+3-41+
|
PF13923+3-41+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR46077+2-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
303-502
|
1.000
|
1-302
|
7t92_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
56710.080
|
4.691
|
-22.500
|
29.084
|
10.159
|
52.988
|
47.012
|
13.147
|
15.936
|
50.199
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1339.231
|
1564.823
|
1052.327
|
913.787
|
1200.761
|
1044.157
|
1133.441
|
1199.958
|
1534.991
|
1666.923
|
1610.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.802
|
-0.913
|
— |
0.362
|
-0.187
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.