Hg_chrom4_TN10mRNA_7252
Organism: Heterodera glycines Gene Locus: chr4:1519591-1520403 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 1.599 | 0.682 | 0.431 | 0.521 | 1.442 | 0.298 | 1.875 | 1.25 | 1.182 | 1.42 | 1.471 | 2.083 | 0.481 | 1.148 | 0.893 | 0.922 | 1.042 | 0.962 | 1.103 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6863
|
— | — |
1.889
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
3.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KKKK
|
28-48
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.381
|
0.427
|
0.041
|
0.287
|
0.271
|
0.077
|
0.151
|
0.109
|
0.131
|
0.443
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003767
|
2.000
|
1.000
|
Hsc_gene_19820.t2
|
Hsc_gene_19820.t1;Hsc_gene_19820.t2
|
— |
G5EE06.1 Alpha-(1,3)-fucosyltransferase fut-5 [Caenorhabditis elegans]
|
KAF7633534.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.863|GO:0003674_0.794|GO:0003824_0.667|GO:0005575_0.648|GO:0016740_0.642|GO:0110165_0.638|GO:0016757_0.625|GO:0016758_0.623|GO:0008417_0.619|GO:0008152_0.601|GO:0005622_0.580|GO:0009987_0.569|GO:0043226_0.551|GO:0043229_0.551|GO:0016020_0.549|GO:0043227_0.516|GO:0043231_0.507|GO:0005737_0.506|GO:0046920_0.501
|
IPR001503+2-94_2-122+|IPR038577+1-99+
|
— |
PF00852+2-94+Glycosyltransferase_family_10_(fucosyltransferase)_C-term
|
— |
PTHR11929+2-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
18705.710
|
10.558
|
16.000
|
25.625
|
16.250
|
50.000
|
50.000
|
18.750
|
6.875
|
43.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
91.391
|
29.297
|
48.095
|
73.828
|
43.746
|
37.995
|
27.198
|
92.280
|
27.184
|
247.283
|
152.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.491
|
1.198
|
0.723
|
-0.789
|
— | — |
1.177
|
-1.620
|
— | — | — | — | — |
No JSON data available for plots.