Hg_chrom4_TN10mRNA_7258
Organism: Heterodera glycines Gene Locus: chr4:1681895-1685420 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.345 | 1.518 | 1.025 | 0.512 | 1.583 | 0.837 | 0.565 | 0.89 | 1.451 | 1.203 | 2.023 | 1.222 | 1.484 | 0.685 | 0.848 | 0.933 | 0.681 | 0.719 | 1.141 | 0.96 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6869
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KKVKKIGESNRKETR,KRGASKLLKNSELKKRIKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.315
|
0.506
|
0.065
|
0.367
|
0.240
|
0.193
|
0.209
|
0.040
|
0.329
|
0.440
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000309
|
1.000
|
8.000
|
Hsc_gene_11840.t1;Hsc_gene_11840.t2;Hsc_gene_1902.t1;Hsc_gene_1902.t2;Hsc_gene_1902.t3;Hsc_gene_1902.t4;Hsc_gene_1902.t5;Hsc_gene_1902.t6
|
— | — | — |
KAI3420061.1 hypothetical protein GPALN_003394 [Globodera pallida]
|
MBN1778557
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004175|GO:0030178
|
— |
IPR002816+4-274+|IPR040230+126-314+
|
— |
PF01963+4-274+TraB/PrgY/gumN_family
|
— |
PTHR31120+126-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
265-337
|
1.000
|
1-264
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
39433.270
|
9.275
|
11.000
|
34.421
|
11.869
|
54.896
|
45.104
|
19.288
|
15.134
|
40.356
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
95.328
|
0.915
|
62.763
|
264.258
|
19.922
|
2.741
|
4.050
|
2.203
|
372.447
|
3.904
|
161.851
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.866
|
8.032
|
2.180
|
-3.766
|
-2.843
|
— | — | — | — | — | — |
10.167
|
— |
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