Hg_chrom4_TN10mRNA_7267
Organism: Heterodera glycines Gene Locus: chr4:2138397-2139918 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 0.867 | 0.616 | 1.052 | 1.469 | 0.869 | 0.847 | 1.186 | 1.055 | 0.87 | 1.592 | 1.396 | 2.166 | 1.108 | 0.553 | 0.63 | 1.334 | 0.668 | 1.304 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6877
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.801
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.316
|
0.254
|
0.091
|
0.260
|
0.144
|
0.048
|
0.142
|
0.007
|
0.253
|
0.832
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000248
|
2.000
|
8.000
|
Hsc_gene_1509.t1;Hsc_gene_16850.t1;Hsc_gene_22548.t1;Hsc_gene_22550.t1;Hsc_gene_22550.t2;Hsc_gene_22582.t1;Hsc_gene_22585.t1;Hsc_gene_22585.t2
|
Hsc_gene_22579.t1;Hsc_gene_7638.t1
|
— | — |
KAI3411181.1 hypothetical protein GPALN_003264 [Globodera pallida]
|
MBQ6899380
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
33218.170
|
8.042
|
6.500
|
27.797
|
13.559
|
47.458
|
52.542
|
15.593
|
12.203
|
47.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
26.025
|
0.931
|
10.853
|
10.015
|
28.980
|
56.428
|
4.647
|
152.113
|
17.225
|
1.952
|
8.497
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.318
|
3.302
|
— |
1.505
|
0.975
|
-3.602
|
1.327
|
-4.894
|
— | — | — | — | — |
No JSON data available for plots.