SCN Proteipedia

Hg_chrom4_TN10mRNA_7270

Organism: Heterodera glycines Gene Locus: chr4:2185816-2189544 Feature type: polypeptide

Protein Sequence

Length: 425

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.122	0.876	0.813	0.73	0.863	1.508	0.7	2.235	0.366	1.208	0.606	1.799	0.98	1.448	1.873	0.908	1.003	0.891	0.724	0.415	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6880	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.872

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRRR,RFSKRRQ,HHQRAGRKRKRRG	—	—	—	—	—	—	0.000	—	—	0.239	0.313	0.024	0.593	0.147	0.252	0.217	0.019	0.626	0.095

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001639	3.000	1.000	Hsc_gene_7633.t1	—	—	P55196.3 Afadin [Homo sapiens]	KAI1706325.1 ras association (RalGDS/AF-6) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005911\|GO:0007165	GO:0008150_0.945\|GO:0005575_0.897\|GO:0009987_0.893\|GO:0110165_0.892\|GO:0003674_0.886\|GO:0065007_0.885\|GO:0050789_0.880\|GO:0050794_0.863\|GO:0005488_0.839\|GO:0005622_0.812\|GO:0016020_0.797\|GO:0032502_0.796\|GO:0048856_0.796\|GO:0005515_0.772\|GO:0030154_0.754\|GO:0048869_0.754\|GO:0016043_0.743\|GO:0071840_0.743\|GO:0005737_0.697\|GO:0071944_0.684\|GO:0034330_0.680\|GO:0005886_0.670\|GO:0030054_0.603\|GO:0032501_0.587\|GO:0043226_0.581\|GO:0050896_0.576\|GO:0051716_0.557\|GO:0007275_0.555\|GO:0048518_0.555\|GO:0048522_0.551\|GO:0070161_0.551\|GO:0005911_0.550\|GO:0007154_0.542\|GO:0048731_0.538\|GO:0023052_0.535\|GO:0007165_0.520\|GO:0048468_0.510	IPR000159+58-160_70-149_70-158_295-384_297-382+\|IPR028842+5-386+\|IPR029071+69-148_296-383+	SM00314+58-160_295-384+	PF00788+70-149_297-382+Ras_association_(RalGDS/AF-6)_domain	—	PTHR10398+5-386+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;158-248	2.000	3-157;249-425	2m4n_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.858	47514.030	10.020	24.500	27.294	10.353	49.412	50.588	17.647	9.647	51.765

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	magenta	189.871	122.630	209.537	145.823	119.922	80.426	68.274	106.915	85.876	446.206	291.779

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.542	—	-0.413	-0.313	-0.562	—	—	-0.503	—	—	—	—	—

No JSON data available for plots.

Back to Browser