Hg_chrom4_TN10mRNA_7271
Organism: Heterodera glycines Gene Locus: chr4:2191625-2197595 Feature type: polypeptideProtein Sequence
Length: 976
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.382 | 0.857 | 1.413 | 1.298 | 1.077 | 0.732 | 1.434 | 1.457 | 1.038 | 1.226 | 1.085 | 1.423 | 0.867 | 0.69 | 0.864 | 0.957 | 0.807 | 0.709 | 0.874 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6881
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKRCGLEPENLISRRRKRQ,KRCGLEPENLISRRRKRQF
|
— | — | — | — |
1-19
|
0.996
|
1.000
|
0.000
|
0.000
|
0.234
|
0.124
|
0.041
|
0.192
|
0.166
|
0.108
|
0.229
|
0.029
|
0.157
|
0.793
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000276
|
7.000
|
2.000
|
Hsc_gene_1689.t1;Hsc_gene_22556.t1
|
Hsc_gene_22548.t1;Hsc_gene_22578.t2;Hsc_gene_22587.t1;Hsc_gene_22588.t1
|
— |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.795|GO:0005575_0.604|GO:0110165_0.604|GO:0032501_0.553|GO:0003674_0.541
|
IPR000742+818-829+|IPR001506+569-794_610-794_615-633_691-709_710-727_741-756_780-793+|IPR006026+586-746+|IPR024079+547-796+
|
SM00235+586-746+
|
PF01400+610-794+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+545-884+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-976
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
109973.490
|
6.718
|
4.000
|
26.844
|
11.885
|
48.873
|
51.127
|
14.344
|
12.500
|
48.566
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
90.700
|
23.505
|
13.526
|
7.529
|
46.835
|
175.120
|
40.053
|
306.042
|
9.605
|
159.878
|
95.475
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.029
|
-1.778
|
-0.733
|
2.605
|
1.916
|
-2.120
|
0.699
|
-2.792
|
-4.175
|
— | — | — | — |