Hg_chrom4_TN10mRNA_7274
Organism: Heterodera glycines Gene Locus: chr4:2285666-2291204 Feature type: polypeptideProtein Sequence
Length: 822
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.622 | 1.33 | 1.327 | 0.923 | 1.358 | 0.343 | 0.797 | 1.277 | 1.162 | 1.019 | 0.995 | 1.288 | 1.419 | 1.17 | 1.366 | 0.591 | 0.798 | 0.903 | 1.31 | 1.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6884
|
— | — |
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RDEKRTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.778
|
0.307
|
0.060
|
0.534
|
0.137
|
0.091
|
0.048
|
0.009
|
0.134
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
CAD2204203.1 unnamed protein product, partial [Meloidogyne enterolobii]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676|GO:0003677|GO:0003887|GO:0006260
|
— |
IPR004868+311-499_541-632+|IPR017964+656-664+|IPR023211+589-725+|IPR043502+307-738+
|
— |
PF03175+311-499_541-632+DNA_polymerase_type_B,_organellar_and_viral
|
— |
PTHR33568+121-802+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39
|
1.000
|
40-822
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.559
|
94570.220
|
5.929
|
-7.500
|
31.265
|
13.504
|
47.324
|
52.676
|
15.815
|
15.450
|
48.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
147.070
|
2.580
|
8.053
|
1.513
|
2.356
|
2.770
|
0.000
|
2.516
|
9.640
|
628.781
|
363.435
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.409
|
— |
-2.307
|
— | — |
-5.620
|
— |
-5.348
|
— | — |
-6.651
|
— |
9.472
|
No JSON data available for plots.